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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGATGCCATGGGGATGAACATGGTTTCCAAAGGAGTCCAAAACGTGCTTACTTTTCTCCAAAGTGATTTTCCAGATATGGATGTTATTGGGATATCTGgtaattaattaaattaaattaaacatgacatgacatcacccttaatcttttgctttattcactatggtcaaacttgatgtcacgatgaattaaaaattggaatatatttatataacag

Basic information

species Glycine max
transcript GLYMA01G36080.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G36080.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g01740.t01 (Vitis vinifera), 5'ss of exon 3
GGGGATGCCATGGGGATGAACATGGTTTCCAAAGGAGTCCAAAACGTGCTTACTTTTCTCCAAAGTGATTTTCCAGATATGGATGTTATTGGGATATCTGgtaattaattaaattaaattaaacatgacatgacatcacccttaatcttttgctttattcactatggtcaaacttgatgtcacgatgaattaaaaattg-gaatatatttatataacag
|| ||||| ||||| ||||||||||| |||||||||||||||||||| ||   ||| || ||||  ||||| || || |||||||| || || || || |||||           || || ||| || ||   ||   |    ||     |||   || ||   || | ||  ||||   ||   ||||| ||   ||  ||||      |        
GGTGATGCAATGGGTATGAACATGGTCTCCAAAGGAGTCCAAAACGTCCTGGATTTCCTTCAAACCGATTTCCCTGACATGGATGTCATCGGCATCTCCGgtaa-----------aattttaac-tggcagaccaattctaccaa-----tgcccgatgca---tgctaaagtttgaatccatc-tgaatcaatgtttttgaatcgccccag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193412054|gb|FK380421.1|FK380421
EST:     TACTTTTCTCCAAAGTGATTTTCCAGATATGGATGTTATTGGGATATCTG                         GGAATTTCTGTTCGGATAAGAAGGCTGCGGCAGTGAACTGGATTGAGGGGG
genomic: TACTTTTCTCCAAAGTGATTTTCCAGATATGGATGTTATTGGGATATCTGgtaattaatt ... tatataacagGGAATTTCTGTTCGGATAAGAAGGCTGCGGCAGTGAACTGGATTGA-GGGG