1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATTGGCGTCATATTCGCAGCTCGTGACACCACCGCCAGTGTGCTGACGTGGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTgtaagtgtcttctgggtcctaccaccaccaccacccttgtttttttctttgtcaatttttgaggccataaagatagtaaaaaagtagttcaaaaataatt...
species | Glycine max |
transcript | GLYMA01G35660.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACT GAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAGEST: gi|12489669|gb|BG043190.1|BG043190
genomic: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTgtaagtgtct ... gacttcacagGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAG
EST: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACT GAGGAACAAGAGTGCATATTGAAGAGCAAGGAATAAAGTGGAGAAGATAAGEST: gi|5820326|gb|AI988532.1|AI988532
genomic: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTgtaagtgtct ... gacttcacagGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAG
EST: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACT GAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAG
genomic: GGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTgtaagtgtct ... gacttcacagGAGGAACAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAGAAGATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGGCGTCATATTCGCAGCTCGTGACACCACCGCCAGTGTGCTGACGTGGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTgtaagtgtcttctgggtcctaccaccaccaccacccttgtttttttctttgtcaatttttgaggccataaagatagtaaaaaagtagttcaaaaataatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaataa