1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATGCTGTTCTCTATCAGTGCATATGCTGTGTGGCTTCTATATATCCCAATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaaatactgaaatgtgttttgagtttacatgatacgtgacattgttagtggatttggttattttgctcacatgcatgttgttaattgttatgtgggcag
species | Glycine max |
transcript | GLYMA01G35650.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAG AGTGACAGTCATAATCTGAAGTACATGGGCATTGATEST: gi|193609589|gb|FK564859.1|FK564859
genomic: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaa ... atgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGAT
EST: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAG AGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGEST: gi|208277887|gb|GE074894.1|GE074894
genomic: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaa ... atgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG
EST: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAG AGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTGEST: gi|207833030|gb|GD801329.1|GD801329
genomic: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaa ... atgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG
EST: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAG AGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG
genomic: ATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaa ... atgtgggcagAGTGACAGTCATAATCTGAAGTACATGGGCATTGATGCCCTTGGTCGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGCTGTTCTCTATCAGTGCATATGCTGTGTGGCTTCTATATATCCCAATCCTAAGTTGTTAGAGGCTGCTGCGGATGTAATTGCGAAATTTTTGAAGgtttggttaaatactgaaatgtgttttgagtttacatgatacgtgacattgttagtggatttggttattttgctcacatgcatgttgttaattgttatgtgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG