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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCCTAAGCAATCCTCAGGTTCTCTGCAAATTAAGCCAATCAGTTTCCCTGAATGCAGCATAGACTATCAAGACTACACTCCATGCACAGATCCAAAGgtattaaatggtagtcatttgctaatactgtaggatttgtagaagaatgtttcattgctgattgagcatgcataattttacag

Basic information

species Glycine max
transcript GLYMA01G35220.5
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G35220.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 2
TTCTCCTAAGCAATCCTCA---GGTTCTCTGCAAATTAAGCCAATCAGTTTCCCTGAATGCAGCATAGACTATCAAGACTACACTCCATGCACAGATCCAAAGgtattaaatggt-----agtcatttgctaatactgtaggat------ttgtagaaga---------atgtttcattgctgattgagcatgcataattttacag------
   ||| ||| |||| |||    || |||| ||||||||  || |   |||||| |||||||| |  || |||||||||||||||||||| |||||||||| ||||| ||    |       | ||||     | || |||         || |  | ||          |||   |||||| |    |  ||  ||  | ||  |      
---TCCCAAGGAATCGTCATCTAGTCCTCTCCAAATTAAATCAGTTGCTTTCCCAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatcacttcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397603|gb|EV267476.1|EV267476
EST:     CTGAATGCAGCATAGACTATCAAGACTACACTCCATGCACAGATCCAAAG                         AGATGGAGAAAGTATGGTGTGTACCGGCTTACTTTGTTAGAACGCCATTGC
genomic: CTGAATGCAGCATAGACTATCAAGACTACACTCCATGCACAGATCCAAAGgtattaaatg ... aattttacagAGATGGAGAAAGTATGGTGTGTACCGGCTTACTTTGTTAGAACGCCATTGC
EST: gi|209724247|gb|BW658126.1|BW658126
EST:     CTGAATGCAGCATAGACTATCAAGACTACACTCCATGCACAGATCCAAAG                         AGATGGAGAAAGTATGGTGTGTACCGGCTTACTTTGTTAGAACGCCATTGC
genomic: CTGAATGCAGCATAGACTATCAAGACTACACTCCATGCACAGATCCAAAGgtattaaatg ... aattttacagAGATGGAGAAAGTATGGTGTGTACCGGCTTACTTTGTTAGAACGCCATTGC