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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtgctattattttatttaattttttatagttattttatttgatttactgtataaataatatgtgcag

Basic information

species Glycine max
transcript GLYMA01G34560.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g14260.1 (Oryza sativa), 5'ss of exon 2
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtgctattattttatttaattttttatagtta--ttttatttgatttactgtataaataatatgtgcag--------------------------------------------------
| ||||| || ||||| || || |||| |||||| || || ||||| ||||| ||| |||| ||||| ||||||||  | |||||||| |||||||||||||    ||| ||  | |  | |    |||||| |  || | ||| |    |      ||  |  | |                                                      
TTCTTCGTTTCCTGGAAAAACTCTGTGCTGATTCTCAAATCTTGGTAGACATTTTTCTCAATTATGATTGTGATGTACACTCATCAAACATATTTGAGAGgtaatttataatactgta-attgagctatagtgagcttctttttaaaggtccccccgaaggacctataacactcattaggatgctaaccagatattgtgttatcttaattttggactacag

upper sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G01960.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtg--ctattattttatt------taattttttatagttattttatttgatttactgtataaataatatgtgcag-----------------------------------------------------------------
||||||| ||  |||| ||||| || |||||||||||||| ||||| || || || ||||||||||| || |||||||| ||||| |||||||||||||||| ||  ||| ||| || ||      ||  |||      | | | |||||  |||   |||| |    |  |  ||                                                                  
TGCTTCGGTTCTTGGACAAGCTCTGCGTTGATTCACAGATTTTGGTAGATATCTTCATCAACTATGATTGCGATGTCAACTCATCCAATATATTTGAGAGgtatgatctaatatcttgttgtggcttatctttacgccctgaatctatttattttgtggtatcagagctgcgatcattaactagtgcgaactatttgaagtagcattcatttctgtattggttttcttgaccttgtttttag

upper sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G60860.1 (Arabidopsis thaliana), 5'ss of exon 2
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtgctattattttatttaattttttatagttatttta--tttgatttactgtataaataatatgtgcag------------------------------
| ||||| ||||| || || |||||| | |||||||| ||  | ||||| |||||  | ||||| || || |||||||||||||||||||| |||||||||| || |||     |   |  ||   | |    | ||||  |||  || |  ||  || |  | || | |                               
TTCTTCGGTTTCTTGACAAACTTTGTTTGGATTCACAAATCCTAGTTGATATATTCTTGAACTACGATTGCGATGTCAATTCATCAAATATCTTTGAGAGgtatgttatgtcccttgatgcttcgctgtttaaagtttaagtttcgttcag-gtggaagttctttgcgtaatttatgtttcctctgtatgatcatgtttag

upper sequence: GLYMA01G34560.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g00800.t01 (Vitis vinifera), 5'ss of exon 2
TGCTTCGATTTCTGGATAAGCTTTGTGTTGATTCACAGATATTGGTTGACATATTTATCAACTATGACTGTGATGTCAATTCATCAAATATATTTGAGAGgtgtg--ctattattttatttaattttttatagttattttatttgat-------ttactg--tataaataatatgtgcag--------------------
||||||| ||||| || || || ||||||||||||||||| || || |||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||| ||  || ||   || |||   ||  || |  ||||  |||  |         | |||  | |||| ||| |  |  |                    
TGCTTCGGTTTCTAGAGAAACTCTGTGTTGATTCACAGATTTTAGTAGACATATTCATCAATTATGATTGTGATGTCAATTCATCAAACATATTCGAGAGgtatgtcctgtttggttttttttgttgatacaaatattcaattatacaaaagcacttctggttgtaaaaaatttcagttggtggcaaagctctttgttac