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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTTACCATGTCGGACGATGAGAGAGAGGAGAAGGAATTGGATCTCACTTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACAgtgtgtttcactctctcatttctcattttttttggttaaattctaaaagggtttttgtttttggatacattgggtttattactttgatgggttatcgttaaagctttctgttttactttgatgggttatttgcgtttttatttttcttatgttgatgagtaaggttttgtttttaattaaacag

Basic information

species Glycine max
transcript GLYMA01G29420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G29420.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 1
GACGTTACCATGTCGGACGATGAGAGAGAGGAGAAGGAATTGGATCTCACTTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACAgtgtgtttcactctctcatttctcattttttttggttaaattctaaaagggtttttgtttttggatacattgggtttattactttgatgggttatcgttaaagctttctgttttactttgatgggttatttgcgtttttatttttcttatgttgatgagtaaggttttgtttttaattaaacag
  ||  || |||||||| || || |||||||||||||| ||||||||||||||||| ||||| ||||| || ||||||||||| |||||||||| ||||||| |  ||   |   || | | | || | | || |||   |   | | |  | | | | ||  |||        ||| ||  |||| |||| | |||||     |||  |||                                                                        
CTCGAAACGATGTCGGATGACGAAAGAGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTCGTCACCAAATACAAGAGCGCTGCTGAGATTGCTAACAgt-tactttctttcttcgtatat-atatatatttgttttttctgatatgcatatatatgttgcgatt-------tttttttttttggtggggtttcgttgg---tttgggtt------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710685|gb|BW676559.1|BW676559
EST:     TTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACA                         AGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTG
genomic: TTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACAgtgtgtttca ... aattaaacagAGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTG
EST: gi|192326702|gb|FK017329.1|FK017329
EST:     TTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACA                         AGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTG
genomic: TTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACAgtgtgtttca ... aattaaacagAGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTG
EST: gi|298195396|gb|HO039227.1|HO039227
EST:     TTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGGGATTGTTAACA                         AGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTG
genomic: TTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACAgtgtgtttca ... aattaaacagAGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTG
EST: gi|13478014|gb|BG507662.1|BG507662
EST:     TTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACA                         AGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTG
genomic: TTCTCCGGAAGTTGTCACTAAGTACAAGAGCGCCGCTGAGATTGTTAACAgtgtgtttca ... aattaaacagAGGCCTTGCAGTTAGTTATTTCGGAATGTAAACCAAAGACAAAGATTGTTG