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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttcttactgatttaagtaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag

Basic information

species Glycine max
transcript GLYMA01G25940.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G25940.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79210.2 (Arabidopsis thaliana), 5'ss of exon 2
-------------------------------GTTTGCAGTTT--CTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttcttactgatttaagtaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag
                                ||||||| ||   ||    |||||   |||||||| |||||||| ||||||||||||||||| || |||||||    ||  | ||   |  ||| | || |  ||| ||   ||   |  || ||| |    |  || ||  | | ||  ||| || || || |||||
TAAATTTCCAGAGATGACACTATTTCGCATTTTTTGCAGCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGgtattaactttgtttatcatatcaatgttatctc-tttctgagcatttgg--aacggttt--cttcggggtttgattcatgttgtggt-ttatgaaacag

upper sequence: GLYMA01G25940.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G16470.2 (Arabidopsis thaliana), 5'ss of exon 1
---------------------------------GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttcttactgatttaagtaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag
                                 | || |  |   |||           ||||| ||||||||||| ||||||||||||||||| || |||||      |   | ||   ||| | |   |||| ||  | |||     ||  |   ||| ||     || | ||  |                      
GGAAATTGATCCTACTCGTTTGTGTTGTTCACAGCTTTCGCTAATTTGCTTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGgtacgaacttggttaatcatagtgagt-attttggttagtttttgctgcgactaatttgttgtactgtgtctgaaacag---------------------

upper sequence: GLYMA01G25940.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79210.3 (Arabidopsis thaliana), 5'ss of exon 2
------------------GTTTGCAGTTT--CTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttcttactgatttaagtaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag
                   ||||||| ||   ||    |||||   |||||||| |||||||| ||||||||||||||||| || |||||||    ||  | ||   |  ||| | || |  ||| ||   ||   |  || ||| |    |  || ||  | | ||  ||| || || || |||||
ATGACACTATTTCGCATTTTTTGCAGCTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGgtattaactttgtttatcatatcaatgttatctc-tttctgagcatttgg--aacggttt--cttcggggtttgattcatgttgtggt-ttatgaaacag

upper sequence: GLYMA01G25940.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G16470.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttcttactgatttaagtaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag
  || |  |   |||           ||||| ||||||||||| ||||||||||||||||| || |||||      |   | ||   ||| | |   |||| ||  | |||     ||  |   ||| ||     || | ||  |                      
-CTTTCGCTAATTTGCTTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGgtacgaacttggttaatcatagtgagt-attttggttagtttttgctgcgactaatttgttgtactgtgtctgaaacag---------------------

upper sequence: GLYMA01G25940.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G79210.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTTGCAGTTTCTTGTGCGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttcttactgatttaagtaatttgatttgatttttgtttatgaagagaatggtgtggtgtgtggtttcaactaattgtgttgtgttgtggaacag
        |   ||    |||||   |||||||| |||||||| ||||||||||||||||| || |||||||    ||  | ||   |  ||| | || |  ||| ||   ||   |  || ||| |    |  || ||  | | ||  ||| || || || |||||
------CTTGATTTAGTTGGTTTTCAATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGgtattaactttgtttatcatatcaatgttatctc-tttctgagcatttgg--aacggttt--cttcggggtttgattcatgttgtggt-ttatgaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309680|gb|FG999893.1|FG999893
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|24206299|gb|BU965552.1|BU965552
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|15204528|gb|BI427296.1|BI427296
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|9564578|gb|BE474087.1|BE474087
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|213598011|gb|DB972199.1|DB972199
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|7924388|gb|AW830414.1|AW830414
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|298198188|gb|HO039727.1|HO039727
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCCGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|21602716|gb|BQ613047.1|BQ613047
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|58014614|gb|CX701356.1|CX701356
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCNTTCTGGAAAGC-TGTTTCAGATTGAGCATGCC-TGNACAGCTGTTGGC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTG-TTCAGATTGAGCATGCCTTG-ACAGCTGTTGGC
EST: gi|120494647|gb|EH222814.1|EH222814
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|14258901|gb|BG881809.1|BG881809
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAATCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|4313519|gb|AI460638.1|AI460638
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|6073037|gb|AW102424.1|AW102424
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTAGT-GGCT
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCT-GTTGGCT
EST: gi|7925135|gb|AW831161.1|AW831161
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|151406778|gb|EV276593.1|EV276593
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|19269188|gb|BM885444.1|BM885444
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|4397406|gb|AI496403.1|AI496403
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|21889053|gb|BQ742266.1|BQ742266
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|19052912|gb|BM731579.1|BM731579
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|20448816|gb|BQ252940.1|BQ252940
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|192316846|gb|FK010833.1|FK010833
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|192326825|gb|FK018922.1|FK018922
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|21888974|gb|BQ742187.1|BQ742187
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
EST: gi|23735184|gb|BU765862.1|BU765862
EST:     CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAG                         CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC
genomic: CGGTTTATCATGGGGGATAGTCAGTATTCGTTTTCTCTCACCACATTTAGgtattgttct ... tgtggaacagCCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCCTTGACAGCTGTTGGCTC