Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGACAACAAAAGACTACTTGTCTATGACTATGTCCCTAACAATACCCTTTATTTTCATCTACATGgtaaaactatatctgagtgataaaagattgtttcagttcattttgattgactttgattgtattaactgaaattataatttgcag

Basic information

species Glycine max
transcript GLYMA01G23180.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G23180.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G458548_T02 (Zea mays), 5'ss of exon 2
CGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGACAACAAAAGACTACTTGTCTATGACTATGTCCCTAACAATACCCTTTATTTTCATCTACATGgtaaaactatatctgagtgataaaagattgtttcagttcattttgattgactttgattgtattaactgaa----attataatttgcag
||||||||||||||| | |||||||||||||||    |  || ||||  ||||||| || |||| |||  |||| || || ||  ||| |||||| || ||||    |||| |    |  |||    |||    |||  |||   ||   ||   | |  |  || ||||    | |  ||| | |||
CGCCATTTGGTTTCTCTTGTGGGATACTGCATTTCCAATGACCAAAGGTTACTTGTATACGACTTTGTTTCTAATAACACGCTGCATTATCATCTTCACGgtatg-ttatagcctctttctaatcctttgcaagagt--attcccatcttctgccagtacaaaaattgaactgaactgcaatct-cag

upper sequence: GLYMA01G23180.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02460.t01 (Vitis vinifera), 5'ss of exon 2
CGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGACAACAAAAGACTACTTGTCTATGACTATGTCCCTAACAATACCCTTTATTTTCATCTACATGgtaaaactatatc--tgagtgataaaagattgtttcagttcattttgattgactttgattgtattaactgaaattataatttgcag
||||||||||| ||  | ||||| |||||||||   || | | |||| || || |||||||||||||| |||||||||||||||||||| ||||| ||||||||  || ||    | ||     ||  || ||||  | | |   ||  | |||     ||| ||        || ||||||| ||
CGCCATTTGGTCTCACTTGTGGGTTACTGCATTTCTGAGAGCCAAAGGCTGCTCGTCTATGACTATGTTCCTAACAATACCCTTTATTTCCATCTTCATGgtaaggctgtagtgataagcttccaagaatagtttgtggtaa---tggataactgattatgtgttgctcc---ttgtaatttgtag