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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGCCCACAAATTCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgcatggaatatatacaagtgctttttctaaatagttaatgtctttgtacctgattttgttgagtgtacattagaaacaatagcatgccacttg...

Basic information

species Glycine max
transcript GLYMA01G22680.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G22680.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g02820.t01 (Vitis vinifera), 5'ss of exon 2
GCGATCTTTTGGAACAGAAGGAAGAAAAAAGGATGGCCCACAAATTCCTCCAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtat-catgcatggaatatatacaagtgctttttctaaatagttaatgt---ctttgtacctgattt-tgttgagtgtacattagaaacaatagcatgccacttg
  | || || || ||||||||| |||| |||||||| || ||| | |||||| ||||||| |||||||| || || || || ||||| | ||||||||||||||  ||  |||  |   ||   | ||  |  ||| |||   || | |   ||   |   ||| |  | |  |||   | | |   || ||||  ||  |||| 
AAGGTCATTCGGTACAGAAGGACGAAAGAAGGATGGTCCCCAAGTCCCTCCAAGTGACAAAGTTTATGAATACATCCTATTTCGTGGAAGTGACATCAAGgtatatatatatgtgaataatttgaatgtctcctctcaatgcctattttgacctggatgattgaataatctcaagt---cgtgaattaccatagt-tgaaactt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708362|gb|BW683952.1|BW683952
EST:     CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAG                         GATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAAC
genomic: CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgca ... ttttctgcagGATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAAC
EST: gi|18040495|gb|BM308789.1|BM308789
EST:     CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAG                         GATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAAC
genomic: CAGGTGACAAGGTTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgca ... ttttctgcagGATTTACAGGTTAAATCTTCTCCACCCGTCCAGCCTATTCCACAAGTCAAC