Sequence
atgc intronic sequence ATGC exonic sequenceCAAAGCACCCTGAAGAGGATAGGAGTGAATGCTATCCCTGCAATTGAAGAAGTCAACATCTTTAAGGATGAAATAGTTATCCAGTTTTTAAACCCCAAAGgtaatattaattggtgataattttagtatacaatttatttcaacattttaagttgactctatttgttcaaaatggaatcttttgcag
Basic information
species | Glycine max |
transcript | GLYMA01G18780.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G18780.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G131577_T02 (Zea mays), 5'ss of exon 2
CAAAGCACCCTGAAGAGGATAGGAGTGAATGCTATCCCTGCAATTGAAGAAGTCAACATCTTTAAGGATGAAATAGTTATCCAGTTTTTAAACCCCAAAGgtaatattaattggtgataattttagtatacaatttatttcaacattttaagttgactctatttgttcaaaatggaatcttttgcag
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CAGAGCACCCTGAAAAGAATAGGAGTGAACACCATTCCTGGTATTGAAGAGGTCAACATCTTTAAGGATGATGTTGTTATTCAGTTTGTGAATCCTAAAGgtaagatactccag-----accccagtactcaacaggatt-agtacttgacttattttctaacaatattttttttgttccccttcag
upper sequence: GLYMA01G18780.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G001887_T03 (Zea mays), 5'ss of exon 3
CAAAGCACCCTGAAGAGGATAGGAGTGAATGCTATCCCTGCAATTGAAGAAGTCAACATCTTTAAGGATGAAATAGTTATCCAGTTTTTAAACCCCAAAGgtaatattaattggtgataattttagtatacaatttatttcaacattttaagttgactctatttgttcaaaatggaatcttttgcag
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CAAAGCACCTTGAAAAGAATAGGAGTGAACAGCATTCCTGGTATTGAAGAGGTCAACATCTTTAAGGATGATGTTGTTATTCAGTTTGTAAATCCTAAAGgtatgatactctgg-----actccagtactcaacaagatt-agtacttcac-ttatttctaaaaatattttgtgggttcccctccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4395726|gb|AI494723.1|AI494723EST: AGTCAACATCTTTAAGGATGAAATAGTTATCCAGTTTTTAAACCCCAAAG TACAAGCATCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCACCACAAA
genomic: AGTCAACATCTTTAAGGATGAAATAGTTATCCAGTTTTTAAACCCCAAAGgtaatattaa ... tcttttgcagTACAAGCATCTATTGCTGCCAACACTTGGGTTGTTAGTGGTTCACCACAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAGCACCCTGAAGAGGATAGGAGTGAATGCTATCCCTGCAATTGAAGAAGTCAACATCTTTAAGGATGAAATAGTTATCCAGTTTTTAAACCCCAAAGgtaatattaattggtgataattttagtatacaatttatttcaacattttaagttgactctatttgttcaaaatggaatcttttgcag
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