Sequence
atgc intronic sequence ATGC exonic sequenceTCCAATTGGGGGTGACACAATCTCTGTGACAAGTGGTGTTGTTTCACGCATGGAGATACTCTCTTATGTTCATGGTTCAACGGAACTTCTGGGACTGCAGgtaacataggttctaagctatcccttttcacttttccatgtatgccccgcttgtccatttatatatgttaaattgaagcgtctcttcgaatcctttgcag
Basic information
species | Glycine max |
transcript | GLYMA01G16820.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G16820.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g12780.1 (Oryza sativa), 5'ss of exon 2
TCCAATTGGGGGTGACACAATCTCTGTGACAAGTGGTGTTGTTTCACGCATGGAGATACTCTCTTATGTTCATGGTTCAACGGAACTTCTGGGACTGCAGgtaacataggttctaagctatcccttttcacttttccatgtatgccccgcttgtc-catttatatatgttaaatt------gaagcgtctcttcgaatcctttgcag--------------------------------------
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CCCAATTGGAGGAGACACGATCTCAGTCACAAGTGGTGTTGTATCTAGAATAGAGATACTTTCATATGTTCATGGTTCAACGGAGCTTCTAGGATTGCAGgtttttc---tcttaagatctttgcatgcttttgattgtctatattttgcatattgtagacatagtttttacttctctttggaattatttctaataatctcttaacctgggagcatacttaagttttcactgtttcatggaacag
upper sequence: GLYMA01G16820.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g50880.1 (Oryza sativa), 5'ss of exon 2
TCCAATTGGGGGTGACACAATCTCTGTGACAAGTGGTGTTGTTTCACGCATGGAGATACTCTCTTATGTTCATGGTTCAACGGAACTTCTGGGACTGCAGgtaacataggttctaagctatcccttttcacttttccat-gtatgccccgcttgtccatttatatatgttaaattgaagcgtctcttcgaatcctttgcag--
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TCCAATTGGAGGAGACACAATATCTGTGACAAGTGGGGTGGTCTCCAGGATAGAGATACTTTCATATGTTCACGGTTCTACAGAACTTCTAGGATTGCAGgtt-cattttctccccacaattctcatttagaatagtattatctgtgaggataacatgttgagaaatcataagtcttt-taacttttggggttttatggacag
upper sequence: GLYMA01G16820.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0066g01660.t01 (Vitis vinifera), 5'ss of exon 2
TCCAATTGGGGGTGACACAATCTCTGTGACAAGTGGTGTTGTTTCACGCATGGAGATACTCTCTTATGTTCATGGTTCAACGGAACTTCTGGGACTGCAGgtaacataggttctaagctatcccttttcacttttccatgtatgccccgc--ttgtccatttatatatgttaaattgaagcgtctctt-cgaatcctttgcag
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CCCAATCGGGGGCGACACAATCTCTGTCACAAGTGGTGTTGTATCACGCATGGAGATATTATCTTATGTTCATGGTTCAACTGAGCTTCTTGGTCTTCAGgttatccattctttataatgtttagcctggttgttagcataatgccttgacatttcttgcttgtaattctcgatttcattgataggttgtgaatggcttg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15203292|gb|BI426060.1|BI426060EST: TGGAGATACTCTCTTATGTTCATGGTTCAACGGAACTTCTGGGACTGCAG ATAGATGCTGCGATAAATTCTGGGAATTCTGGTGGACCTGCTTTCAATGAT
genomic: TGGAGATACTCTCTTATGTTCATGGTTCAACGGAACTTCTGGGACTGCAGgtaacatagg ... tcctttgcagATAGATGCTGCGATAAATTCTGGGAATTCTGGTGGACCTGCTTTCAATGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAATTGGGGGTGACACAATCTCTGTGACAAGTGGTGTTGTTTCACGCATGGAGATACTCTCTTATGTTCATGGTTCAACGGAACTTCTGGGACTGCAGgtaacataggttctaagctatcccttttcacttttccatgtatgccccgcttgtccatttatatatgttaaattgaagcgtctcttcgaatcctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG