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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTCAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttaccttctaaagatagtctgttatagtttctgcatggtttaactttatggattttggctctgttgacttttagcattgtgatggtcaatgaaaaattc...

Basic information

species Glycine max
transcript GLYMA01G10880.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G10880.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G035928_T01 (Zea mays), 5'ss of exon 2
TTGTCAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttaccttctaaagatagtctgttatagtttctgcatggtttaactttatggattttggctctgttgacttttagcattgtgatggtcaatgaaaaattc----
| ||  ||||  |||||||||||| ||| || |||||||| |||||||| || |||||||| ||||  || |||||||| | ||| |||||||||||||||| |  |    |  ||     || ||    | ||  | ||    | |    |  ||   |||   ||  |  | |      || | |  | |      ||    
TAGTTCGACCACTTCCTCATGGAGTTAAACTTCATGCACTCATTGATGCTTGTCATAGTGGGACTGCACTTGATTTGCCTTATCTCTGCAGAATGAACAGgtaatttat--attatgcatggtcatttgatttgtctagtagggcctctgaggcttcccctcccctgtgtgctggag--aggaggcttgagggtttggtcttgg

upper sequence: GLYMA01G10880.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G155422_T01 (Zea mays), 5'ss of exon 2
TTGTCAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttaccttcta--aagatagtctgttatagtttctgcatggtttaactttatggattttggctctgttgacttttagcattgtgatggtcaatgaaaaattc----
| ||  ||||  |||||| ||||| ||| || |||||| | |||||||| || |||||||| ||||  || |||||||| |  || |||||||||||||||| || || ||  | |   | |  ||  |  || |  ||| | |  |  | |    || |  | ||  ||  | |    || |||     ||||  || ||     
TAGTTCGACCACTTCCTCGTGGAGTTAAACTTCATGCATTCATTGATGCTTGTCATAGTGGAACTGCACTTGATTTGCCTTACCTCTGCAGAATGAACAGgtaactttatattatgcatggccatttgatcttttttatgttctcccgct-tacccttggcatatgaagagctgt----ttctga-acctaatgggaactttatta

upper sequence: GLYMA01G10880.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G02170.1 (Arabidopsis thaliana), 5'ss of exon 2
TTGTCAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttacc---ttctaaagatagtctgttatagtttctgcatggtt---taactttatggattttggctctgttgacttttagcattgtgatggtcaatgaaaaattc
||||  | ||| |||| ||||| |  ||||| ||| || | || ||||| ||||||||||| || ||||| ||||| || || || ||||||||||||||||||       || ||     |||   |  | |  ||| |   |   |   | |||  |   |   ||  ||   ||||   ||||  |  |              
TTGTACGCCCTCTTCCACATGGTGTCAAGCTCCATTCAATTATCGATGCTTGCCATAGTGGTACCGTTCTGGATTTACCCTTCCTATGCAGAATGAACAGgttattagtccctcaaccgcttctaaaagggatgttgcttacctctctcgttatatttaacatacatccatttttttttttaattgaaacag--------------

upper sequence: GLYMA01G10880.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0021g00990.t01 (Vitis vinifera), 5'ss of exon 4
TTGTCAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttaccttctaaagatagtctgttatagtttc-tgcatggtttaacttta-tggattttggctctgttgacttttagcattgtgatggtcaatgaaaaattc
||||||||||| |||||||||| | |||||| |||||| |||| ||||||||||||||||||||  || | ||||| ||||| ||||||||||||| |||||||  |||         | | ||| | | |  |   || ||||   ||| | | |          |||  | |          |    |      | ||  
TTGTCAGACCTCTTCCTCATGGGGTTAAGCTTCATGCAATAATAGATGCCTGCCATAGTGGCACCATTTTGGATTTACCATTCCTTTGCAGAATGAGCAGgttagtttcatgtacccttgttttaaaatctaatatttgttttattattacttggtgagtaaagaattgtatatggatgcacctagaacctgcatgatat--

upper sequence: GLYMA01G10880.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0013g00220.t01 (Vitis vinifera), 5'ss of exon 2
TTGTCAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttacct-tctaaagatagtctgttatagtttctgcatggtttaactttatggattttggctctgttgacttttagcattgtgatggtcaatgaaaaattc----------------------------------------------------------------------------------------------------
|||| || ||| |||||||||||| |||||| |||||| | |||||||| |||||||||||||||||  ||||||| ||||| || || ||||||||||||| |  | | |    ||   |    |    ||||   ||  |  ||  | ||     |   |     || | | |  |  |  |||   ||  | ||||||                                                                                                    
TTGTTAGGCCTCTTCCTCATGGAGTTAAGCTTCATGCAATCATTGATGCATGCCATAGTGGCACTGTGTTAGATTTACCATTCCTCTGTAGAATGAACAGgtcagttgttttggtatttccaaacaacacttctttgtgaat--accatgtga----taagtggagagagtataaaaa--gaaatgaaaaaccataaattctgtctatatatgctaactttttaataggattcaattccaattttcccttgtccatttttttagtccaccctgcttatagatgtttcctttgtggccatag

upper sequence: GLYMA01G10880.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv16s0013g00210.t01 (Vitis vinifera), 5'ss of exon 2
TTGTCAGACCTATTCCTCATGGAGCTAAGCTACATGCACTAATTGATGCCTGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttaccttctaaagatagtctgttatagtttctgcatggtttaactttatggattttggctctgttgacttttagcattgtgatggtcaatgaaaaattc----------
|||| || ||| |||||| |||||  ||||| |||||| |  ||||||| ||||||||||| |||||  ||||| | ||||| ||||| |||||||||||||||          || |  | |  || |||    |   | ||    |  | || |||  |    | ||||      || |  |  | || || ||  ||          
TTGTTAGGCCTCTTCCTCCTGGAGTCAAGCTTCATGCAATCGTTGATGCATGCCATAGTGGTACTGTGTTAGATCTACCATTCCTTTGTAGAATGAACAGgttagtcc------attggttttcgtatttttcaaactatata----ttcgtatcttgtttggaataacttcctattttttatttttaaaggagaatatcgatattatga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404758|gb|EV274572.1|EV274572
EST:     TGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAG                         GAGTGGGCAATATGTATGGGAGGACCATCGCCCTAGATCTGGTGTATGGAA
genomic: TGCCATAGTGGCACTGTTCTAGATTTGCCATTTCTTTGCAGAATGAACAGgttaccttct ... tatgtaacagGAGTGGGCAATATGTATGGGAGGACCATCGCCCTAGATCTGGTGTATGGAA