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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAATCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatctggccttttcttatgtgttgcttttatcattcttactatggtgcattatcaggctgcaggctgcatagcatgattaacataattctcctg...

Basic information

species Glycine max
transcript GLYMA01G09660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 2
ATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAATCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatctggccttttcttatgtgttgcttttatcattcttactatggtgcattatcaggctgcaggctgcata-gcatgattaacataattctcctg---
 | |||||||| ||| | ||||| ||||||||| |  ||||  | || ||||||||||| ||||||||||| ||||| || |||||||| ||||||||||||||  | |  |    || |       | || |      || | |    |     |   |||         | |||  | | ||||  | ||||   |      
GTGTTTACTGAGAAGGTGCTCAATTTCATGCCCGGTGTTGCTGTGATATCAATGGATAACTACAATGATGCAAGTCGCATAGTTGATGGCAATTTTGATGgtaacccctaag----ttccaagcacttcgcatactatcttatcatcccgtaatttggacagaacttcctttacatttgaaagatttccttaataagcacagaa

upper sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 5'ss of exon 2
ATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAATCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatctggccttttcttatgtgttgcttttatcattcttactatggtgcattatcaggctgcaggctgcatagca-tgattaacataattctcctg-------
 |||| ||||| ||||||||||| ||  |||| ||  ||||  ||||||||||||| ||||| |||||| ||||||| |||||||||||||| |||||||||||    | |   |||      |    ||        | || ||  |       || | |  ||  | |   | |     |||  ||| | ||  |           
GTATTCACTGAGAAGATACTCAATTTTCTGCCAAGTGTTGCTGTCATTTCAATGGACAATTATAATGATTCTAGTCGGATTGTTGATGGGAACTTTGATGgtaagaattttcatcttgataggtcccatgaggaatgaagtcctatgacacattgttttgaaacttgaagtatcttgctgctgacaaaccttatgttttgaaacttag

upper sequence: GLYMA01G09660.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 5'ss of exon 1
ATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCAATCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatctggccttttcttatgtgttgcttttatcattcttactatggtgcattatcaggctgcaggctgcatag-catgattaacataattctcctg
 | ||||||||||||||||||||||| ||||||||||||||  |||| |||||||| || |||||||||||||| |||||||||||||| || |||||||||||||| | |   || |  |  ||| ||  | ||     | |||  |     | | ||     |     | | ||||   | |   |  || || |  | 
GTTTTTACTGAAAAGATACTCAACTTTATGCCCAGCATTGCTGTCATATCAATGGACAACTACAATGATGCTAGCCGAATTGTTGATGGCAACTTTGATGgtaaatcttgttttctctcatcctgt-tttttcttgaagctgttaacacaagtcttgatggaatttttaacaggataggtttcaaataagtatttgtttta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17024004|gb|BM095038.1|BM095038
EST:     AATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATG                         ATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACAATTTAA
genomic: AATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGGAATTTTGATGgtaaatcatc ... ctttgtgcagATCCACGCTTAACAGACTATGACACATTACTCCAGAATCTGCACAATTTAA