1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGATGGTGGTGGTCAGGATGACTCCCCAATGTTGGAAGGTACTAGTGGGGAACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAGgtattattgtaacttgtgtttcagctgtttctactttatgtgttacactgtgatgctactttcttcttatccatttcattgttttccttgtggtag
species | Glycine max |
transcript | GLYMA01G09400.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAG GATGGTGATAATGATAAAGCCAATGGAGCTCAAGAACTACCTAGTGAAGGTEST: gi|193674315|gb|FK617323.1|FK617323
genomic: AACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAGgtattattgt ... cttgtggtagGATGGTGATAATGATAAAGCCAATGGAGCTCAAGAACTACCTAGTGAAGGT
EST: AACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAG GATGGTGATAATGATAAAGCCAATGGAGCTCAAGAACTACCTAGTGAAGGTEST: gi|23734956|gb|BU765737.1|BU765737
genomic: AACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAGgtattattgt ... cttgtggtagGATGGTGATAATGATAAAGCCAATGGAGCTCAAGAACTACCTAGTGAAGGT
EST: AACCTTCTAGCAAAGGACTAAACACAAAGAATAGGAAAAGAAGTGGACAG GATGGTGATAATGATAAAGCCAATGGAGCTCAAGAACTACCTAGTGAAGGTEST: gi|208176092|gb|GD974757.1|GD974757
genomic: AACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAGgtattattgt ... cttgtggtagGATGGTGATAATGATAAAGCCAATGGAGCTCAAGAACTACCTAGTGAAGGT
EST: AACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAG GATGGTGATAATGATAAAGCCAAT
genomic: AACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAGgtattattgt ... cttgtggtagGATGGTGATAATGATAAAGCCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGTGGTGGTCAGGATGACTCCCCAATGTTGGAAGGTACTAGTGGGGAACCTTCTAGCAAAGGACTAAACACAAAGAAAAGGAAAAGAAGTGGACAGgtattattgtaacttgtgtttcagctgtttctactttatgtgttacactgtgatgctactttcttcttatccatttcattgttttccttgtggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA