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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgtttacagctaccttcacatcaaactaaactttaattatattaccaaaattcctgccaattattataaatatccaaaaaatatcatatacaattgattat...

Basic information

species Glycine max
transcript GLYMA01G06870.4
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G06870.4 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g55080.1 (Oryza sativa), 5'ss of exon 2
GGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgtttacagctaccttcacatcaaactaaactttaattatattaccaaaattcctgccaattat----tataaatatccaaaaaatatcatatacaattgattat
|||| || || ||||||||||| ||  |||| || || |||||||||||||| ||| |||||||||| || ||||| || || || || || ||||| ||||   |   |  |     ||| | |    | ||   | | |  |||      |   | || ||      |   | | |  |   | ||| |  ||   |     
GGTTCGCGTTCATGACCAAGAGCGAGATTGACCACCTCGAGGATGGCTACAGGTGGAGGAAGTATGGGCAAAAGGCGGTCAAGAACAGCCCATTCCCAAGgtgagcgcgtgacaatcgatcgatcgcttccttctgtttctgtccatcccctcgatcgatcatatctcgtgtgtgttctcagc-tctcacaagcatggggg---

upper sequence: GLYMA01G06870.4 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g00720.t01 (Vitis vinifera), 5'ss of exon 2
GGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgtttacagctaccttcacatcaaactaaactttaattatattaccaaaattcctgccaattattataaatatccaaaaaatatcatatacaattgattat------
| ||||| |||||||||||||||||||||||||||||||| || |||||  | |||||||||||||| || ||||| ||||||||||||||||| |||||||||   ||| |||| | ||  || | | |||    | ||   | | || |  | |     |||  |   || |||  ||| || |  |  |  | || |      
GCTTTGCGTTTATGACCAAGAGTGAAGTTGATCATCTTGAAGACGGCTATCGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAGgtttgtggct-ccttta-atttaatttagcttc---tgtagctcaacaactgttacagtcaatttcagcaattcaaccaatttcttgcatgaa-gtttgtgggtct

upper sequence: GLYMA01G06870.4 (Glycine max), 5'ss of exon 2
lower sequence: PP1S244_77V6.1 (Physcomitrella patens), 5'ss of exon 1
GGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTCCTTTCCCTAGgt---ttaca--gctaccttcacatcaaactaaactttaattatattaccaaaattcctgccaattat-tataaatatccaaaaaatatcatatacaattgattat
| | |||  | | ||||| |   ||    |||    | || ||||| ||||  ||||| |||||||| ||||||||||||||||| ||||||   || ||||   | |||   ||    | |  ||     |  |     |   | | | |    ||    | | |    ||  |||      ||  ||||  | |  | |     
GCTATGCGATCAAGACCAGGGCAGACACCGATGTATTGGATGATGGTTACAAGTGGCGCAAGTATGGACAGAAGGCAGTTAAAAACAGTCCTCATCCCAGgtacttcacactactggtctaatttctgtgcacgcaaccttggcagtgctattgctctgatccactgcacatgcatacagtggaaccatcaagt-ctctcg-----