Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAAgtgagtttctatcgccaactactctgtgttcatagcaatttgatttgtacatagacttggtataatttaatttgagtttaatttctatacactgtgtctc...

Basic information

species Glycine max
transcript GLYMA01G05170.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G05170.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0026g01890.t01 (Vitis vinifera), 5'ss of exon 2
GTCGACGAAGCGATTCGACGGTGA------AAGGTTCGAGCACCTTGCGTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAAgtgagtttct-atcgccaactactctgtgttcatagcaatttgatttgtacatagacttggtataatttaatttgagtttaatttctatacactgtgtctc
||| || |||||||| | || |||       ||||| || || ||||| || ||||||||||| |||||||| || || ||| | ||||| |||||||||||||  ||  |    |  |    | |  |   | || ||       || |||     | |    ||| ||||     |  ||  |  |||         
GTCCACCAAGCGATTTGGCGCTGATCAGAAGAGGTTTGAACATCTTGCATTCCTGAACTTGGCCCAGAATGTAGTTTGCTTAGTGTGGTCATTTATAAgtgagtcccttgtttttatttttcttctacttggaccagttgagagaatagataatagagctcagttttcattttttggtgcttattccacag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298179789|gb|HO025004.1|HO025004
EST:     GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAA                         TGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
genomic: GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAAgtgagtttct ... atgtggacagTGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
EST: gi|19268926|gb|BM885182.1|BM885182
EST:     GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAA                         TGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
genomic: GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAAgtgagtttct ... atgtggacagTGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
EST: gi|151396162|gb|EV266039.1|EV266039
EST:     GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAA                         TGATAAAGATGTGGTCTAGTGGAAATTTCTGGTGGTGCTCCTTTGGTGGAG
genomic: GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAAgtgagtttct ... atgtggacagTGATAAAGATGTGGTCTAGTGGAAATT-CTGGTGGTGCTCCTT-GGTGGAG
EST: gi|254325032|gb|GR834457.1|GR834457
EST:     GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAA                         TGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
genomic: GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAAgtgagtttct ... atgtggacagTGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
EST: gi|254321435|gb|GR824752.1|GR824752
EST:     GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAA                         TGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
genomic: GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAAgtgagtttct ... atgtggacagTGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
EST: gi|298191399|gb|HO038878.1|HO038878
EST:     GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAA                         TGATAAAGATGTGATCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
genomic: GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAAgtgagtttct ... atgtggacagTGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
EST: gi|6482110|gb|AW201381.1|AW201381
EST:     GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAA                         TGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT
genomic: GTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAAgtgagtttct ... atgtggacagTGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTT