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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagtaaactgaagaatttacaaatcctaagatttcttttttccttaggggtttgttcccttttgtggtctaattatgcttttcttgtttttctag

Basic information

species Glycine max
transcript GLYMA01G05080.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G05080.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 2
TCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagtaaactgaagaatttacaaatcctaagatttcttttttccttaggggtttgttcccttttgtggtctaattatgcttttcttgtttttctag
| ||||| ||||||||| || ||   |  |||||||| |||||||| |||||||| || || ||||| ||||| |||||||||||||| || || |||||||| | |  || ||| ||||    | |  |  ||    ||    |||  ||  |  |   ||    || || ||| |||||||    ||||||||| |   
TGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAACAATATAATGCTTTGGAATGCTGTAATTTTTGGgtaaggtgttagacttaagag---atatgttttattcctttcggttttattttga-tccattatacttagttgtc-aattatg----tcttgttttgcag-

upper sequence: GLYMA01G05080.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0026g01770.t01 (Vitis vinifera), 5'ss of exon 3
TCATGAGAGATTTCAAAAGATTGCAACTAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagtaaactgaagaatttacaaatcctaagatttctt--ttttccttaggggtttgttcccttttgtggtc-taattatgc-ttttcttgtttttctag---
||||||| |||||||| || |||||||  ||||| ||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||| ||||| |||||||||| | | ||| || |  |||    | || |    ||   |  |||   || || |||      ||      ||   | |||| |   |||||| ||   | |   
TCATGAGGGATTTCAAGAGGTTGCAACAGGATCCACCTGCAGGCATCAGTGGTGCTCCTCAAGACAATAACATTATGCTCTGGAATGCTGTTATATTTGGgtatgctgggaaa-tgcatcattgtttattctttcttttgtatagtttgtgttgggtgttaaagatctgaatcagttgcacttatacgccttcttggttgaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22933973|gb|BU551112.1|BU551112
EST:     GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGG                         ACCAGATGACACCCCTTGGGATGGAG
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagt ... gtttttctagACCAGATGACACCCCTTGGGATGGAG
EST: gi|14126011|gb|BG790449.1|BG790449
EST:     GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGG                         ACCAGATGACACCCCTTGGGATGGAG
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagt ... gtttttctagACCAGATGACACCCCTTGGGATGGAG
EST: gi|19452681|gb|BM954091.1|BM954091
EST:     GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGG                         ACCAGATGACACCCCTTGGGATGGAG
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagt ... gtttttctagACCAGATGACACCCCTTGGGATGGAG
EST: gi|19452497|gb|BM953907.1|BM953907
EST:     GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGG                         ACCAGATGACACCCCTTGGGATGGAG
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagt ... gtttttctagACCAGATGACACCCCTTGGGATGGAG
EST: gi|151402063|gb|EV271876.1|EV271876
EST:     GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGG                         ACCAGATGACACCCCTTGGGATGGAG
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagt ... gtttttctagACCAGATGACACCCCTTGGGATGGAG
EST: gi|19348294|gb|BM892826.1|BM892826
EST:     GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGG                         ACCAGATGACACCCCTTGGGATGGAG
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagt ... gtttttctagACCAGATGACACCCCTTGGGATGGAG
EST: gi|11273919|gb|BF324308.1|BF324308
EST:     GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGG                         ACCAGATGACACCCCTTGGGATGGAG
genomic: GGGGCTCCCCAAGACAATAATATTATGCTTTGGAATGCAGTTATCTTTGGgtatgatagt ... gtttttctagACCAGATGACACCCCTTGGGATGGAG