Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACGGTTGCTGTAAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGgtttgtatattttcaaaagtccttcttttcttctattattaactactgaattctatatttttaatgatctttcatgtttggatcatgtgacag
Basic information
species | Glycine max |
transcript | GLYMA01G04930.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g40590.1 (Oryza sativa), 5'ss of exon 2
TGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACGGTTGCTGTAAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGgtttgtatattttcaaaagtccttcttttcttctattattaactactgaattctatattttta-atgatctttcatgtttggatcatgtgacag----
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TGAGGAGAACGGAACTGCTCCCGTAAAACCTGGCACAGGATTAACGGTTGCTGTCAAGACACTTAACCATGATGGGCTGCAGGGCCATAAAGAGTGGGTGgtatgt---tttgaattgcttcagcatacagaccacaaaatattattcaactgtcttctaatgcatcatcaattaaactagcgttatttcattttcag
upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os09g19700.1 (Oryza sativa), 5'ss of exon 2
TGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACGGTTGCTGTAAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGgtttgta------tattttcaaaagtccttcttttcttctattattaactactgaattctatatttttaatgatctttcatgtttggatcatgtgacag----------
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TGAAGAGAATGGAACTGCACCTATGAAACCTGGTACAGGCCTTACAGTTGCTGTCAAAACACTCAATCATGATGGGCTTCAAGGGCACAAAGAATGGGTGgtatgtgctttgttattcttattgttcaaattgcttttgttccgttca-tgtttggtaccattcccattagaacccccaatgactgacatttgttctgcttcgtttcag
upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 2
TGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACGGTTGCTGTAAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGgtttgta-tat-tttcaaaagtccttcttttcttctattattaactactgaattctatatttttaatgatctttcatgtttggatcatgtgacag--------------
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TGAAGAAAATGGAACTGCACCTGTGAAACCTGGTACAGGTCTCACAGTTGCTGTCAAGACGCTGAACCATGACGGGCTTCAAGGGCATAAAGAATGGGTGgtatgtgctatgttttacctattttcaagttcacatatcatcttgtttacatgtttttggtttcaattcatgatgagactgatactctgttttgattgatcttttccag
upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G150806_T01 (Zea mays), 5'ss of exon 2
TGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACGGTTGCTGTAAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGgtttgta-tattttcaaaagtccttcttttcttctattattaactactgaattc-tatatttttaatgatctttcatgtttggatcatgtgacag------------------------
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CGAAGAGAACGGAACTGCACCCGTGAAACCTGGTACAGGTCTCACGGTTGCTGTCAAGACACTAAACCATGACGGGCTTCAAGGGCATAAAGAATGGGTGgtatgtgctatgttt----gttttacctatttgcaagt-tcacatatgatgtttacatatttttggtgtcaattcttgatggctgcgtctcatactctgttttaattgatcttttccag
upper sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 2
TGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACGGTTGCTGTAAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGgtttgtatattttcaaaagtccttcttttcttctatta---ttaactactgaattctatattt------ttaatgatctttcatgtttggatcatgtgacag-------------------------------------------------------------------------------
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TGAAGAGAATGGAACTGCTCCAGTGAAGCCTGGCACAGGGCTTACTGTTGCTGTTAAAACGCTCAATCATGATGGGCTTCAGGGTCATAAAGAATGGCTGgtttgaaactttcctaatctattttatttcctatatggaattgaactcctttatttgttcttcccccactttgtgtttttcttcttttgtcttttgttttttgtttttgatttttgatttatctttttttagaaatcccttttatgtcttggctcttctcaagtttaatctcattttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15285775|gb|BI469666.1|BI469666EST: CTGTAAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTG GCTGAAGTGAATTTTCTCGGTGATCTAGTTCATCCAAACCTTGTTAAACTT
genomic: CTGTAAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGgtttgtatat ... catgtgacagGCTGAAGTGAATTTTCTCGGTGATCTAGTTCATCCAAACCTTGTTAAACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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TGAAGAAAATGGAACTGCTCCAGTGAAACCTGGCACAGGGCTTACGGTTGCTGTAAAAACCCTAAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGgtttgtatattttcaaaagtccttcttttcttctattattaactactgaattctatatttttaatgatctttcatgtttggatcatgtgacag
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