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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattttgagtttccttgcag

Basic information

species Glycine max
transcript GLYMA01G04920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g09120.2 (Oryza sativa), 5'ss of exon 2
GCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttgttggaaatgtctagttttgttattacttttcc---------------------acaagcttatgctttccgcagacccttaatttgttgc---ttgtatgattttgagtttccttgcag
|   | |||| ||    ||||||||      |  ||   |        | ||  | || || | | ||||||||||||||||||||||||||||||||||||||||| || | |   |||  || | || ||  | ||                       | ||   ||||| || |     | ||| |||  |||      || | |||||||  |   |  |||
GTCTAGTGGTCTGCGGGAAGAGATGTGATTCTGTTGGCATCCCAGCACTCAGTTCTTCATTAAATCTTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttatttgcataatctgtttgtattgttgttgttttgacgtatatctcgtgttcaaaataaatatatgcatttcattccctctttattaattgagagcagttttattttgaaatgattcacag

upper sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G176506_T07 (Zea mays), 5'ss of exon 2
-------------------------GCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattt---tgagtttccttgcag--------------------------
                         |   | ||||  |    ||||||||   |     ||   |        | ||  | || || |   | ||||| |||||||||||||| |||||||||||||||||| || | | | | | ||    |  ||  || || ||  |  |  |  ||          | ||    |||  |||   |||     | | ||| ||                              
CTGAACAGCTACAGCAAGCTAACTGGTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGgtagaatcaaacagagctttgtattgtgagttatttgca-tattttgtccattattttgttgtctacttgtct-cgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag

upper sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G176506_T04 (Zea mays), 5'ss of exon 2
GCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattt---tgagtttccttgcag--------------------------
|   | ||||  |    ||||||||   |     ||   |        | ||  | || || |   | ||||| |||||||||||||| |||||||||||||||||| || | | | | | ||    |  ||  || || ||  |  |  |  ||          | ||    |||  |||   |||     | | ||| ||                              
GTCTAGTGGTCAGCAGGAAGAGATGTGACTCGATTGGCATCCCAGCACTCAGTTCGTCGTTAAAACTCTCTCTCGGTAGAATCAAACAGAGCTTTGTATTgtgagttatttgca-tattttgtccattattttgttgtctacttgtct-cgtcttatttttgtgttgaaaacattgtatgtccaattcatgcgtgcttcattattaaactgatcattttgaactgatcacag

upper sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G02710.3 (Arabidopsis thaliana), 5'ss of exon 2
GCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattttgagtttccttgcag
| ||||| || ||   |||| | | | || | |  |  || | |  | ||||| | || ||  |||||||||| ||||||||||||||||| || |||||||||||             |  |||| |||||   ||   |     |||   | | |    |    |  |||| |  |   ||  || |  ||  | ||||||
GTAGATTAGTCTGCGGAAAGCGGTACTGCTTGCGAGGAGTAGATTGTCTAAGCTCGTCGTTAGTTATTTCTCTCGGTAGAATCAAACAAAGTTTCGTATTgtgagt----------acattatttttttattgtgtt---atggagttacagtctgctacaatagat--tttgatattgacattgttctc-gtaactttgcag

upper sequence: GLYMA01G04920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0026g01590.t01 (Vitis vinifera), 5'ss of exon 3
GCAGATTGGTGTGTCAAAAGAGATGCAGCATTCCTGATGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagttgttggaaatgtctagttttgttattacttttccacaagcttatgctttccgcagacccttaatttgttgcttgtatgattt------------tgagtttc-cttgcag
||| |||||| ||  |||||||||||| | |  |||   | || ||  |  |  | ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||  || |  |||  ||| || |  | |       |   |||  | |  | |||   ||||| | ||     ||||  |             || ||| | |||||||
GCAAATTGGTCTGCGAAAAGAGATGCACCTTATCTGGAATTGGCCTCCTTGGTGCTTCCTTAATTATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTgtgagtttttacaatt-cctaaatttcttttaccatagatgtcaa--tatagtgtttgaagatggttaatgtcttcgccttatgcatcccacaacatatatgtgttgctcttgcag