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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGCGGTCGGCGATAAGCTTGCCGTTATAACCACTGATCCCTTTATGGAATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttccttttttccttactggtctaggtcttgtttggataaatttctcattaaacgtttactagaagaataaatagcttatgcacaagtcaaaattg...

Basic information

species Glycine max
transcript GLYMA01G03610.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03610.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0011g06630.t01 (Vitis vinifera), 5'ss of exon 2
TTCGCGGTCGGCGATAAGCTTGCCGTTATAACCACTGATCCCTTTATGGAATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttccttttttccttactggtctaggtcttgtttggataaatttctcattaaacgtttactagaagaataaatagcttatgcacaagtcaaaattg---
||  | || || |||||| | || || || ||||| ||||| || ||||||||| | |||||||| ||||||||||||||||||  ||||||  |  | ||||| ||  | | | | ||  || | |  || |||||| | |   ||| |  |||||     | |  |  |||        | |    | |      |||   
TTTTCTGTTGGGGATAAGTTAGCTGTGATTACCACCGATCCTTTCATGGAATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaa-tttttatctacttttttgttatttgttttgttttgttt--tttttttttaaatcagaattccagcaattctggatatttatttaggcttcgtttgatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726207|gb|BW659572.1|BW659572
EST:     ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAAC                         AGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA
genomic: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttcct ... ggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA
EST: gi|19934429|gb|BQ079459.1|BQ079459
EST:     ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAAC                         AGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA
genomic: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttcct ... ggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA
EST: gi|14126517|gb|BG790955.1|BG790955
EST:     ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAAC                         AGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAAGGAAGAAATAA-T
genomic: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttcct ... ggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAA-TAAAT
EST: gi|18717773|gb|BM522996.1|BM522996
EST:     ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAAC                         AGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA
genomic: ATTGCCCTCTGCAATCCATGTCAAACGCATTGCTAACGATCCTGCTGAACgtaagttcct ... ggtttctcagAGACTGGGGAATCTGTGCTTCTCATTAAGGGTCCTCAGGGAAGAATAAATA