Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctccaaatcgcaattattgagttcattgcttctgttgttaatcctcaattcaatttagtttagtgtggtttggtttgtattttggttaatctg...

Basic information

species Glycine max
transcript GLYMA01G03540.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208058942|gb|GD858974.1|GD858974
EST:     CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|298196763|gb|HO041506.1|HO041506
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193540735|gb|FK494385.1|FK494385
EST:     GCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193680678|gb|FK624038.1|FK624038
EST:     CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|17021044|gb|BM092078.1|BM092078
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|298171167|gb|HO016199.1|HO016199
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGCGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|7925655|gb|AW831681.1|AW831681
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|208168717|gb|GD968735.1|GD968735
EST:     GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|20497759|gb|BQ272689.1|BQ272689
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|9258120|gb|BE346267.1|BE346267
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCACGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193423340|gb|FK389847.1|FK389847
EST:     GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|208335440|gb|GE133385.1|GE133385
EST:     CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|208281372|gb|GE073730.1|GE073730
EST:     CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193327071|gb|FK291146.1|FK291146
EST:     GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|20497767|gb|BQ272697.1|BQ272697
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|192319496|gb|FK005936.1|FK005936
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|298166915|gb|HO010354.1|HO010354
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|207756379|gb|GD729546.1|GD729546
EST:     GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|298189852|gb|HO038255.1|HO038255
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|213597292|gb|DB962082.1|DB962082
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|23733200|gb|BU764786.1|BU764786
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTT
EST: gi|9258144|gb|BE346291.1|BE346291
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193626942|gb|FK574062.1|FK574062
EST:     GCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|208336730|gb|GE135134.1|GE135134
EST:     GGCCGGGCTCAGTCGGGTAGTGGAAAAGCTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GGCCGGGCTCAG-CGGG-AGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193591619|gb|FK548666.1|FK548666
EST:     CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193544705|gb|FK501672.1|FK501672
EST:     GCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193599449|gb|FK552434.1|FK552434
EST:     CTCAGCGGGAGTGGAAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: CTCAGCGGGAGTGG-AAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|208231783|gb|GE031270.1|GE031270
EST:     CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193629144|gb|FK578092.1|FK578092
EST:     CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: CTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193467439|gb|FK432552.1|FK432552
EST:     GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|298182273|gb|HO026448.1|HO026448
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|192319497|gb|FK005937.1|FK005937
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|12691346|gb|BG157682.1|BG157682
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGGTACATCAATGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|193597014|gb|FK554874.1|FK554874
EST:     GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|298165762|gb|HO008733.1|HO008733
EST:     TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCA-TGGAGCCTAAT
genomic: TTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
EST: gi|207776271|gb|GD749592.1|GD749592
EST:     GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAG                         CTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT
genomic: GGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctc ... cctgctgcagCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCAATGGAGCCTAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCGGTTGTTCAAGCGTGCGAAGTCAAACACTGTTGTGTTGGCCGGGCTCAGCGGGAGTGGAAAAACTGTTATCTTCTATCAGgtattggctccaaatcgcaattattgagttcattgcttctgttgttaatcctcaattcaatttagtttagtgtggtttggtttgtattttggttaatctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA