1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATgtaatgcgttctactctaattgaacatgcaaattgcaaagccttcttagacttgttttgttttgatctctttctgtaatgcatgagcttctttggaaact...
species | Glycine max |
transcript | GLYMA01G01960.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAAT GCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTGEST: gi|7686678|gb|AW757256.1|AW757256
genomic: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATgtaatgcgtt ... gtatttgcagGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTG
EST: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAAT GCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTGEST: gi|9564916|gb|BE474425.1|BE474425
genomic: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATgtaatgcgtt ... gtatttgcagGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTG
EST: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAAT GCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTGEST: gi|23733229|gb|BU764801.1|BU764801
genomic: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATgtaatgcgtt ... gtatttgcagGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTG
EST: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAAT GCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTGEST: gi|15813270|gb|BI785545.1|BI785545
genomic: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATgtaatgcgtt ... gtatttgcagGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTG
EST: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAAT GCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTGEST: gi|192310953|gb|FK001590.1|FK001590
genomic: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATgtaatgcgtt ... gtatttgcagGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTG
EST: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAAT GCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTGEST: gi|16348244|gb|BI973839.1|BI973839
genomic: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATgtaatgcgtt ... gtatttgcagGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTG
EST: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAAT GCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTG
genomic: CGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATgtaatgcgtt ... gtatttgcagGCAAGTAAGAAGATAGCAGATGCGAAGCTTGCAAAAGATTTTCAGGCGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACTTCGGCTAAGCTTAAGCAAGCTAGTGAGATTGATCACAACGTTGAAGTTAATgtaatgcgttctactctaattgaacatgcaaattgcaaagccttcttagacttgttttgttttgatctctttctgtaatgcatgagcttctttggaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG