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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCAGTCTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGgtttttattgaaacagtctttgttggcattaatggcttatcattttcgttattgtcaagattggattttggttcacccagctcccttattttgtag

Basic information

species Glycine max
transcript GLYMA01G01740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01740.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 3
GAGCAGTCTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGgtt--tttattgaaacagtctttgttggcattaatggcttatcattttcg-----ttattgtc----aagattggattttggttcacccagctcccttattttgtag-----
||||||||||| ||||| ||| |||||||| |||||||||| ||| |||| |||||||||  |||| | |||   |    | |   | ||| || ||  |||| | |     ||||||||    ||   |  || | | || ||  |  |   ||  ||| ||      
GAGCAGTCTTCAACCACGAGCGCTGGAACAGTTAATCCTGATTGGTCTGGATTTCAGgttcctttagtcaaaacttaaaagcttatactaagggttttccattgttgctttcttattgtcttttaattgtttatgtggcttgacttaattttttttatttttattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21255865|gb|BQ452753.1|BQ452753
EST:     CTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAG                         GCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCT
genomic: CTTCGACCACCAGCACTGGAACAATTAATCCTGAGTGGCCTGGCTTTCAGgtttttattg ... tattttgtagGCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCT