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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCACAACGAGAAGATGAAGACTCTCAGGAATGAACAACACAGGGGATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATGgtatgcaccatacgtactacatacccttatccgtttgttgcatgtttacatagattccaccatgttttcttattcttctttgttttgtgattctgaacca...

Basic information

species Glycine max
transcript GLYMA01G01170.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254332070|gb|GR846273.1|GR846273
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATGTAG                       
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACA--T-Ggtatgcacca ... ggttaagt
EST: gi|208191627|gb|GD991029.1|GD991029
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         GAGATTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATGATC
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATGgtatgcacca ... ggttaagtagGAGATTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATGATC
EST: gi|209712021|gb|BW668422.1|BW668422
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         T
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATGgtatgcacca ... ggttaagtag-
EST: gi|209712021|gb|BW668422.1|BW668422
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         T
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATGgtatgcacca ... ggttaagtag-
EST: gi|209712021|gb|BW668422.1|BW668422
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         T
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATGgtatgcacca ... ggttaagtag-
EST: gi|6482744|gb|AW201968.1|AW201968
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         GAGATTACAAAGAGGGGTATTATATTGGGAGT-GAAAAAGGTGAAGAAGAT
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATGgtatgcacca ... ggttaagtagGAGATTACAAAGAGGGGTATTATATTGG-AGTTGAAAAAGGTGAAGATGAT
EST: gi|192295560|gb|FG988134.1|FG988134
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         GAGATTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATGATC
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATGgtatgcacca ... ggttaagtagGAGATTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATGATC