Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31472845|gb|CD414873.1|CD414873EST: AATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATG GTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
genomic: AATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATGgtatatatat ... attatggcagGTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
EST:
gi|20498277|gb|BQ273207.1|BQ273207EST: GCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATG GTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
genomic: GCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATGgtatatatat ... attatggcagGTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
EST:
gi|192306263|gb|FG996863.1|FG996863EST: GCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATG GTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
genomic: GCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATGgtatatatat ... attatggcagGTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
EST:
gi|26059648|gb|CA802562.1|CA802562EST: GCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATG GTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
genomic: GCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATGgtatatatat ... attatggcagGTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
EST:
gi|15662109|gb|BI699480.1|BI699480EST: GCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATG GTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
genomic: GCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATGgtatatatat ... attatggcagGTTGGTAACGGCATCACAAATCCAATTAGCAGCTCTAACTGCAAGTCTTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCAAGAACCCCAACCCAAGTCGCTAGCCATGCTCAGAAGTACTTTATTCGCCTTGCAACCATGAATAAGAAAAAGAGACGTTCAAGTCTTTTTGACATGgtatatatatacatagatccatcatgatcaacttcctaattatctcatcttatatcaatcacatatccatatatatgcacttaaattagttttttttata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA