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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtctaattctactattatttttgaagatttagctgactggattaaggtttaatttgtttaccatggcatgggggctaatgacag

Basic information

species Glycine max
transcript GLYMA01G00540.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814117|gb|BI786392.1|BI786392
EST:     AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG                         TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: gi|21678137|gb|BQ630488.1|BQ630488
EST:     AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG                         TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: gi|192306411|gb|FG996157.1|FG996157
EST:     AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG                         TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: gi|21677989|gb|BQ630340.1|BQ630340
EST:     AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG                         TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: gi|22931117|gb|BU548256.1|BU548256
EST:     AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG                         TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: gi|208277941|gb|GE074906.1|GE074906
EST:     AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG                         TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: gi|298192751|gb|HO033185.1|HO033185
EST:     AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG                         TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT
EST: gi|298197190|gb|HO041933.1|HO041933
EST:     AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAG                         TTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTCTGTATAGTGGAT
genomic: AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtct ... ctaatgacagTTCCTCCATTATTGAGATATGGCAAGTACTGTGGACTTTTGTATAGTGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCAAAGAGTGCAGTAGACAATGCGAGTCAAGTTTCTGCTCAGgtacatgtctaattctactattatttttgaagatttagctgactggattaaggtttaatttgtttaccatggcatgggggctaatgacag

 GCAAAG