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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaaggtacaaattgatattgtgaatgagaatttataggtccagtattcaaaattttcattattttgtgcag

Basic information

species Glycine max
transcript GLYMA20G25120.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 5'ss of exon 18
TTCCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgt--tagtagaaggtacaaattgatattgtg-----aatgagaatttataggtccagtattcaaaattttcattattttgtgcag--------------
||||||| || |    ||| || || || || || || || ||  |  | |||||||||||||||||||| ||||||||||| ||| | ||  |||| ||||  ||||| |   ||||  |  | | | ||     ||| ||  |   ||  |    || |      | ||||   | | ||| |              
TTCCATTCTCAAGAACTGTCTACATCGAGCAGTCTGATTTTCGTGTAAAGGATTCAAAAGATTATTATGGGCTTGCTCCTGGTAAAACAGTACTACTAAGgtactagtacattatacatctgtagactctgtacttaattagtttgcttactttgtatactttgtggtctcatctatgtttgccgtctgaaactgatag

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 19
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 18
TTCCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa-ggtacaaatt--gatattgtgaatgagaatttata---ggtccagtattca--aaa-----ttttcattattttgtgcag
| || || || |  |||||||| ||||| || || |||||||| ||| | |||||||||||||||||||| || || ||||| ||||||||  | || ||||   ||||| || |||  ||     |||   | |     |||  |   | | ||||  | |  |||     ||     |  | | |||||
TACCGTTCTCTAGAGTTGTATACATTGACCAATCTGACTTCCGAATGAAGGATTCAAAAGATTATTATGGGCTCGCCCCTGGTAAATCTGTTTTGCTAAGgtatatagaaagggacagttttcatcattactacttttgctttgaatatgattcagttgtgactaaacgtgcttcctgctgctctttgcag

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 19
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 19
TTCCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgt--tagtagaag-gtacaaattg-atattgtgaatgagaatttataggtccagtattcaaaattttcattatttt-gtgcag----
| || ||||||||  ||||||| ||||| || || || || |||||| | ||||||||||| || ||||| ||||||||||| ||||| ||  |||||||||  | ||| ||   || || ||| || || |  ||     | |  || |     ||| ||| |    ||  ||||  ||||     
TGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtacttgtaaaattatagaagttgtattttttttattcacttgttcagatatcccattaaaattgagaatctttttcatgcatgcag

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 19
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 19
TTCCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaaggtacaaattgatattgtgaat------gagaatttataggtccagtattcaaaattttcattattttgtgcag
|||||||||| ||| |||| || ||||| ||  | || || |||||| ||||||| |||||||| ||||| ||||||||||| ||||||||  | |||||||   |  |  ||  |||||  ||||   |||      ||| ||    | |   |  ||| | ||||||| | ||     ||||
TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgt--atctatagtttaaatttgtatttccaatctacttgagtataagaaagcagaagattgagaattttcttcatgc-acgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14999379|gb|BI320344.1|BI320344
EST:     GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: gi|7685172|gb|AW755820.1|AW755820
EST:     GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: gi|5753691|gb|AI960978.1|AI960978
EST:     GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: gi|208043203|gb|GD837849.1|GD837849
EST:     ATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
genomic: ATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA