Sequence
atgc intronic sequence ATGC exonic sequenceGGAAGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATGgtacgtgctaataccttgaggaactccaatttttgttttcctgttttcttaaaaaaaatgttcattctcacactttttaatcattgtggcctgtaaagtt...
Basic information
species | Glycine max |
transcript | GLYMA19G32010.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G047310_T01 (Zea mays), 5'ss of exon 17
GGAAGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATGgtacg-tgctaa-taccttgaggaactccaatttttgttttcctgttttcttaaaaaaaatgttcattctcacactttttaatcattgtggcctgtaaagtt--
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TGAAGATCTTTCTCCACATGTACCACTATATAAAGTCATGGAAGGGAATGAGCCATGCTTCTTCAAGACGTACTTTTCTTGGGATAACACAAAATCTTTGgtatgatgtcggctatctttcta---ttttattatgcttttgctgttcttgtacttgggctgggc-ttcttgtactcagtccactttggaccttttcctcctta
upper sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G081322_T01 (Zea mays), 5'ss of exon 20
GGAAGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATGgtacgtgctaataccttgaggaactccaatttttgttttcctgttttcttaaaaaaaatgttc-attctcacactttttaatcattgtggcctgtaaagtt
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TGAAGGTATTTCTCCTGATGTGCCTCTCTATAAAGTCAATGAAGGGAATGAACCTTGCTTCTTCAGGACATACTTCTCCTGGGATAGCGCACGATCCGTGgtatgctcttatatatttactt-ctgtattttaaaagttcagcttttcgttctaagtatgttccgtttattaggtatttgtatggtacagatcatattttg
upper sequence: GLYMA19G32010.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 18
GGAAGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATGgtacgtgctaataccttgaggaactccaatttttgttttcctgttttcttaaaaaaaatgttcattctcacactttttaatcattgtggcctgtaaagtt
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GGAGGGGTTGGCTCTAAATGTACCATTATACAGGGTTACAGAAGGAAATGAACCATGCTTCTTCACTATATACTTTTCTTGGGATTCCACAAAAGCTACTgtatgtgctgctccttgatttgtagtcaacatttctatgccagatgaatttcctttagattctatgtgtggaatgtttgatgaaattttttttcttagctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11413325|gb|BF425336.1|BF425336EST: AACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATG GTGCCAGGGAAC
genomic: AACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATGgtacgtgcta ... tgaaatgcagGTGCCAGGGAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAAGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATGCAAAAGCTATGgtacgtgctaataccttgaggaactccaatttttgttttcctgttttcttaaaaaaaatgttcattctcacactttttaatcattgtggcctgtaaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa