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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaatatcaaaattcacaaatctattaattgtattgttttatttgttcatgtgacaaatatttttattttaaattgcggttatggttgtgttg...

Basic information

species Glycine max
transcript GLYMA18G46420.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 5'ss of exon 12
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGta--ggtgccgaatatcaaaattcacaaatctattaattgtattgttttatttgttcatgtgacaaatatttttattttaaattgcggttatggttgtgttg
 ||||||||| || | || |||||||| ||||| |||||||||||||| || ||||||||||| || ||||| ||||| || || || |||||||||||||||  |   | |||||| |  ||       | | |  ||   | ||   |  | |    |      ||| ||| |||    |||       |||    | |  
TTTGGCTGGTCTATTGCTAGCAGAAACAGAATTCTCCTTACAGGTTGAGTCGGATATTGCTCCTTACCGTGGTCTTCTGTTAGGTCTTTTCTTTATGACGgtaaggactctgaatataatcatcattttttttgtctatgtcaatgagctgataggagtttgcttcaatgtttatatggataat-ataacaatgtacatat--

upper sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G058948_T01 (Zea mays), 5'ss of exon 11
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaatatcaaaattcac-aaatctattaattg-tattgttttatttgttc-atgtgacaaatattttta-ttttaaattgcggttatggttgtgttg----------------------------------------------------------------------------------------------
 ||||||||| |  |||| |||||||| || || |||||||||||||| || ||||| ||||| |||||||| ||||| || || || ||||||||||||||  || ||| | ||  || | ||  |||| | ||||    |  | |  |  | || | ||||  | | | ||  ||  |||  |      | ||||   |                                                                                                  
TTTGGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCCTTACAGGTTGAGTCAGATATAGCTCCTTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtaccgtaaatataattgcattaaatttcttaaacactgatatgctgctagtgctatgtttcgagtgttcctaactttgtaccatcatcatgggcatcaaacaaattaagttatcacagaccttgctactctaatagttactacatttaacttcatattaaacataattaaccattttttggctgggaactgaag

upper sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G093643_T01 (Zea mays), 5'ss of exon 12
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaatatcaaaattcacaaa-------tctattaattgtattgttttatttgt-tcatgtgacaaatattttta-ttttaaattgcggttatggttgtgttg
 || |||||| |  |||| |||||||| || || || || |||||||| || ||||| ||||| |||||||| ||||| || || || ||||||||||||||  || | |   ||  || | ||  ||       |   ||||   |  | |  |  |  | | ||||  ||| | ||  ||   ||| |      | ||          
TTTAGCTGGTCTGTTACTAGCAGAAACAGAGTTCTCATTGCAGGTTGAGTCAGATATAGCTCCCTATCGTGGTCTTCTGTTAGGACTTTTCTTTATGACGgtgagtactgtgaatataattgcattaagaattatttctttaacactgatatactgctaatgttatgtttcaagtgttcctaaccttataccatcatcat----------

upper sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
lower sequence: AT4G00630.2 (Arabidopsis thaliana), 5'ss of exon 11
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaa-----tatcaaaattcacaaatctattaattgtattgttttatttgttcatgtgacaaatatttttattttaaattgcggttatggttgtgttg
 ||||||||| ||||||| ||||| |||||||||||||| || |||||||| ||||| |||||||| ||||| ||||| ||||| |||||||| |||||||||  |   |||     | |  ||| |  |  ||| || | || || ||||||  |||   ||| | || |  |   |||| ||||| |    |   |   | |  
TTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTGGTCTTCTGTTGGGACTCTTCTTCATGACGgtaatttgtgaactaggtcttgaaaatagctgatcgataagtt-tactgttttccttggagatg-gtcagaagt---tattataaataggatattaaggaatata-

upper sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
lower sequence: AT1G01790.1 (Arabidopsis thaliana), 5'ss of exon 12
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGta------ggtgccgaata-------tcaaaattca-caaatctattaattgtattgttttatttgttcatgtgacaaatattt--ttattttaaattgcggttatggttgtgttg-------------------------------------------
 ||||||||| |||| || ||||| || |||||||| || || || ||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||||      | | || ||||        || | || | ||  |||   ||   |   |   |||   |  |   |  ||   |||  || | ||  | |  | |  || |  |||||                                           
TTTGGCTGGTCTACTCCTTGCAGAGACAGAATTTTCGTTGCAAGTAGAATCAGATATTGCTCCATATCGTGGTCTTCTGTTGGGACTCTTCTTCATGACGgtaatatgagtttcctaataactttttccatagtttatcatttctgaaaagaatgaggaactatagatggaaaaggaaaccttttacttgtgttctagtaagatcctgatattgttgtcaactgtaagcaaactaacaaaaagagttccattgatttcag

upper sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 5'ss of exon 10
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaatatcaaaattcacaaatctattaattgtattgttttatttgttcatgtgacaaatatttttattttaaattgcggttatggttgtgttg---
 ||||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| |||||||||||| |   |       |||  |||       | || | || |   ||     ||| | |      ||| ||||     |||  ||||    | ||  |   
TTTGGCTGGTTTGCTTCTTGCAGAAACTGAATTTTCCTTACAGGTTGAATCAGATATTGCTCCATATCGTGGCCTTTTATTGGGTCTCTTCTTCATGACGgtaggttcttcaccatgccatttccaagagaggcatttat-ttatccaatcctaacatataaacctcgtttctattcc---ttgaagttacctgtttggagaga

upper sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
lower sequence: EFJ07595 (Selaginella moellendorffii), 5'ss of exon 9
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaatatcaaaattcacaaatctattaattgtattgttttatttgttcatgtgacaaatatttttattttaaattgcggttatggttgtgttg
  | |||||  | ||  || ||||||| || ||  |  | || |||||||| |||||||| |||||||| || |||||| |||| || ||||||||||| ||| |||         ||||   | |  |||    |    ||| | |    |   ||  || ||                                     
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTGCAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtttcctctaaaaacaata--tcttccgagctcattatctggcgtaa-cacctg-cag------------------------------------

upper sequence: GLYMA18G46420.1 (Glycine max), 5'ss of exon 19
lower sequence: EFJ10973 (Selaginella moellendorffii), 5'ss of exon 9
-TTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGtaggtgccgaatatcaaaattcacaaatctattaattgtattgttttatttgttcatgtgacaaatatttttattttaaattgcggttatggttgtgttg
  | |||||  | ||  || ||||||| || ||  |  |||| |||||||| |||||||| |||||||| || |||||| |||| || ||||||||||| ||| |||         || |   | |  |||    |    ||| | |    |   ||  || ||                                     
TCTTGCTGGACTCCTTTTGTCAGAAACCGAGTTCGCTCTACAAGTTGAATCCGATATTGCACCATATCGGGGTCTTCTTCTGGGACTTTTCTTTATGACAgtaagtggtttcctctaagaacaata--tcttccgagctcattatctggcgtaa-cacctg-cag------------------------------------