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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAGGGTCAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTgtgagtgattctttaagaactctatctagttttagggtgtcatgattttgctgacaactcaagcacatgctttccaaaatataatgagattaaaataaga...

Basic information

species Glycine max
transcript GLYMA17G36540.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 19
ATTTGCAACCCTTGCAACTCGGATGGAGCAGTACATCCAGGGTCAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTgtgagtgattctttaagaactctatctagttttagggtgtcatgattttgctgacaactcaagcacatgcttt---ccaaaatataatgagat---taaaataaga
||||||||| |||||||| || |||||||||||||||||||| || ||||| ||||||||||| || ||||| |||||||||||||||  | |  |    | | |   | |||        | |||  || ||         |      |  |||   |||| ||| | ||  ||   | || ||   
ATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTgtgagtactccgctctctaatgt---tggttaagcaacataatggattagccactgtggtatagttttattttatgccaagataaattggtatatttcaagta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105632117|gb|DW246318.1|DW246318
EST:     ACATCCAGGGTCAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTT                         GTTAGCATAATGTTTGCGACTTTAGAAAAAATTGCACAAACAGATCCAAAG
genomic: ACATCCAGGGTCAGTCTAGGGATTTGGTTGACCAAGCATATACAAAATTTgtgagtgatt ... cgctttacagGTTAGCATAATGTTTGCAACTTTAGAAAAAATTGCACAAACAGATCCAAAG
EST: gi|192294049|gb|FG987218.1|FG987218
EST:     ATCCAGGGTCAGTCTAGGGGATTTGGTTTGACCAAGCATATACAAAATTT                         T
genomic: ATCCAGGGTCAGTCTAGGG-ATTTGGTT-GACCAAGCATATACAAAATTTgtgagtgatt ... cgctttacag-
EST: gi|192294049|gb|FG987218.1|FG987218
EST:     ATCCAGGGTCAGTCTAGGGGATTTGGTTTGACCAAGCATATACAAAATTT                         T
genomic: ATCCAGGGTCAGTCTAGGG-ATTTGGTT-GACCAAGCATATACAAAATTTgtgagtgatt ... cgctttacag-