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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGTTCTCTTGCTGAGCTTGTTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattcttcctacattttccttgccaaaatatttagtgccttttatggttaacttgatcgatatggatgttgccatag

Basic information

species Glycine max
transcript GLYMA17G07380.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07380.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 20
GATGGTTCTCTTGCTGAGCTTGTTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaat----tcttcctacattttccttgccaaaata-tttagtgccttttatggttaact--tgatcgatatggatgt-tgccatag--------
||||| ||| | |   | |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||    |  |  |   |||   ||||    |||  ||  || |||  || |     |  ||  |  |||| |  | ||| |           
GATGGCTCTTTGGAGAATCTTGTTCGCAAGCGATATCAGAGTTTTGACACTGAAATCGGGGCTCAAATAGAGgtaatatatcattgttttctttttcttttgcttttatagctttatgtcttccattggaggataatgcccagtatgcacttatgcaacctccgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6725436|gb|AW309835.1|AW309835
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|207821964|gb|GD796881.1|GD796881
EST:     TTGGGGCTC-AATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|151410382|gb|EV280197.1|EV280197
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|208160487|gb|GD960435.1|GD960435
EST:     GGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: GGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|298173204|gb|HO020188.1|HO020188
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|18693005|gb|BM521853.1|BM521853
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|18733023|gb|BM527382.1|BM527382
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|21887322|gb|BQ740535.1|BQ740535
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|151407803|gb|EV277618.1|EV277618
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|5175496|gb|AI759829.1|AI759829
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|10234449|gb|BE803337.1|BE803337
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|51335738|gb|CO979604.1|CO979604
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|208192569|gb|GD994169.1|GD994169
EST:     AATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: AATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|22525640|gb|BU084451.1|BU084451
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|20814470|gb|BQ298948.1|BQ298948
EST:     CGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: CGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|19934808|gb|BQ079838.1|BQ079838
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|13252690|gb|BG363593.1|BG363593
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|7030028|gb|AW459811.1|AW459811
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|9903061|gb|BE612029.1|BE612029
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAAGAAGGTCAAGGAATGGGG
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAG-AAGAAGGTCAAGGAATGGGG
EST: gi|163921552|gb|EH039311.1|EH039311
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|192327522|gb|FK018198.1|FK018198
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGG
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTT-GAACTGCTTGAGAAGAAGGTCAAGGAATGGGG
EST: gi|208062973|gb|GD860875.1|GD860875
EST:     ATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: ATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|22524847|gb|BU083658.1|BU083658
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
EST: gi|22932991|gb|BU550130.1|BU550130
EST:     TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAG                         GCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA
genomic: TTCGTAAGCGTTATCAGAGTTTTGACACTGAAATTGGGGCTCAAATAGAGgtaaaattct ... gttgccatagGCTGGTAAGGCTGACTTTGAACTGCTTGAGAAGAAGGTCAAGGAATGGGGA