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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcacttctatctctggctttaatctacttgcatctgcctcagtctttaggcaactcttattctttcaatatatatgtctgagtaagaacaacaa...

Basic information

species Glycine max
transcript GLYMA17G04180.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04180.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv05s0077g00470.t01 (Vitis vinifera), 5'ss of exon 20
GCACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcacttctatctctggctttaatctacttgcatctgcctcag--tctttaggcaactcttattctttcaatatatatgtctgagtaagaacaacaa--
|||||||||||||||||| |||||||| ||||||||||||||||| || || || |||||  | ||||| ||||| |||| |||| |  ||   |   | || | | ||   |||  ||| |    |    || | | || | |   || |  | |  |||   || |   
GCACAACTATTTGAATGATTTGCCTTCATTGGACCCAGAATTATACCGCCACCTTATTTTCTTAAAGgtgatgtctcttc-atcttt--ctcctactcattt-cttgtgttacagcttctgtgaatactggttctccctttatttcttaagcttaaaaaagggtaaaacaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425262|gb|CA936782.1|CA936782
EST:     ACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCTTTTTTCTTAAG                         CATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
genomic: ACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcac ... tggctaacagCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
EST: gi|151406815|gb|EV276630.1|EV276630
EST:     ACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAG                         CATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT
genomic: ACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGgtaatgtcac ... tggctaacagCATTATAAGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAAT