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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAGgtatggaagtactctcaacaaactgtagtcttttcccttatttgtatataattaattgggtaaattactcctctaaaagatgctttggttacactactcc...

Basic information

species Glycine max
transcript GLYMA17G02640.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 19
lower sequence: AT3G06400.2 (Arabidopsis thaliana), 5'ss of exon 19
CAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAGgtatggaagtactctcaacaaactgtagtcttttc-ccttatttgtatataattaattgggtaaattactcctctaaaagatgctttggttacactactcc
|||||||||||||| |||||| |||||||  | || |||||||| ||||||||||||       |   | ||      |    | |   | | || ||   || |  || |        ||||||  |   ||  ||  ||| ||||         
CAAACACATCAGAAAAATCAGTTGAAAGACACAATTGATGTTGAAGAACCAGAAGgt-caagcttgtacccactttgttaacatgtacccactttgttaacatgtttttcagcaaacctattactgatt--aagaatttttttgttag--------

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 19
lower sequence: AT3G06400.3 (Arabidopsis thaliana), 5'ss of exon 19
CAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAGgtatggaagtactctcaacaaactgtagtcttttc-ccttatttgtatataattaattgggtaaattactcctctaaaagatgctttggttacactactcc
|||||||||||||| |||||| |||||||  | || |||||||| ||||||||||||       |   | ||      |    | |   | | || ||   || |  || |        ||||||  |   ||  ||  ||| |||| |       
CAAACACATCAGAAAAATCAGTTGAAAGACACAATTGATGTTGAAGAACCAGAAGgt-caagcttgtacccactttgttaacatgtacccactttgttaacatgtttttcagcaaacctattactgatt--aagaatttttttgttagaag-----

upper sequence: GLYMA17G02640.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 19
CAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAGgtatggaagtactctcaacaaactgtagtcttttcccttatttgtatataattaattgggtaaattactcctctaaaagatgctttggttacactactcc
||||||||||| ||||||||| | ||||| ||||||||||| |||||||| ||||||||   | | ||         || |     |    | || |  | ||  |    || ||| |  | | |  ||||  ||    |||  ||         
CAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAGgtattttaattcttct------cttttaagatgcttcctactaatctactaccctttcggtgagct-cactgctaattga-atattgaatatttag----