1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaaatcatatcatattatattacgagaaaaaaacttatacactgacagtgtaaaaagttttacacaatcatctaattacagcccatcatgtat...
species | Glycine max |
transcript | GLYMA15G13380.2 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGEST: gi|21889070|gb|BQ742283.1|BQ742283
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGEST: gi|57575891|gb|CX548862.1|CX548862
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG GAGGCNTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATGEST: gi|58021487|gb|CX708228.1|CX708228
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
EST: ATTTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG GAGGCCTACAAGCGGAGT-ACAAATTGGTTACCTCCTCCATGGGCAATAATEST: gi|58025332|gb|CX712073.1|CX712073
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAAC-AATTGGTTACCTCCTCCATGGGCAATAAT
EST: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAG GAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
genomic: AATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaa ... gtggattcagGAGGCCTACAAGCGGAGTAACAATTGGTTACCTCCTCCATGGGCAATAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGATGTGCTTATCACTCCAGTGCAGTGCAAAGCTTTGTGGAGACAATTTCAGGGAGAAACTGAGTATACAGTTACTCAAGCTATTTCAGCTCAGgtaaaatcaaatcatatcatattatattacgagaaaaaaacttatacactgacagtgtaaaaagttttacacaatcatctaattacagcccatcatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa