Sequence
atgc intronic sequence ATGC exonic sequenceGTGAATCCCATTGCTGTAAATAGTAAGTACTGTAATGTCTTCACGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAGgttagtcattgcaattaatttgtgtctgaattcttgagttcgggactatatcctgctgaaatttatgccacatgtttatgaaatgatatgagttacctataatttattgccattttagcttatagttgtagacatgtattaaccattatcttataatttggattcag
Basic information
species | Glycine max |
transcript | GLYMA15G05680.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G05680.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os01g72940.1 (Oryza sativa), 5'ss of exon 16
GTGAATCCCATTGCTGTAAATAGTAAGTACTGTAATGTCTTCACGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAGgttagtcattgcaattaatttgtgtctgaattcttgagttcgggactatatcctgctgaaatttatgccacatgtttatgaaatgatatgagttacctataatttattgccattttagcttatagttgtagacatgtattaaccattatcttataatttggattcag
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GTCAATCCTATTGCTGTGAACAGCAAATATTGTAATGTTTTCACCGAGAACAAACGAGTTGTTTCAATAATCTCAACTTCAGAGTTTGGAAAGgtttgt-acttctattcttttccccctagactaccaggtaccagcttactgctttgcgtgcctctcgcttcctctgtttcttttgtcaaacatcag-tatgc-----------------------------------------------------------------
upper sequence: GLYMA15G05680.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G133885_T02 (Zea mays), 5'ss of exon 3
GTGAATCCCATTGCTGTAAATAGTAAGTACTGTAATGTCTTCACGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAGgttagtcattgcaattaatttgtgtctgaattcttgagttcgggact-atatcctgctgaaatttatgccacatgtttatgaaatgatatgagttacctataatttattgccattttagcttatagttgtagacatgtattaaccattatcttataatttggattcag
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GTGAATCCCATCGCTGTGAATAGCAAGTATTGCAATGTATTCACTGAGAATAAAAGAGTTGTATCAATGATATCAACTTCAGAGTTTGGAAAGgtttg-catttctgctcttttcctt----attgttatgttcaatgctcatgtagt-ttataatcttttccat-tatttattaaatagttgagactagtctggattga-------------------------------------------------------------
upper sequence: GLYMA15G05680.1 (Glycine max), 5'ss of exon 19
lower sequence: AT4G25970.1 (Arabidopsis thaliana), 5'ss of exon 18
GTGAATCCCATTGCTGTAAATAGTAAGTACTGTAATGTCTTCACGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAGgttagtcat----tgcaattaatttgtgtctgaattcttgagttcgggactatatcctgctgaaatttatgccacatgtttatgaaatgatatgagttacctataatttattgccatttta-gcttatagttgtagacatgtattaaccattatcttataatttggattcag-----------------
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GTTAATCCGATTGCTGTCAATAGCAAGTACTGTAATGTGTTCACTGAGAATAAACGGACCATCGTAATTATATCAACAGCAGAGTTTGGAAAGgtatgtcatcttgtataagtcataaacatcttttttctcggtctgctgatgaaaatatttctcagt---tgcctcttgtgcttga--tgctttga---actcaaattgaagcagtattttataaacgaaggtgtacaatgaaatctgatcttatcgcagaacttgatctcagcttaatatatgtaacag
upper sequence: GLYMA15G05680.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv12s0055g00710.t01 (Vitis vinifera), 5'ss of exon 15
GTGAATCCCATTGCTGTAAATAGTAAGTACTGTAATGTCTTCACGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAGgttagtcattgcaattaatttgtgtctgaattcttgagttcgggactatatcctgctgaaatttatgccacatgtttatgaaatgatatgagttacctataatttattgccattttagcttatagttgtagacatgtattaaccattatcttataatttggattcag
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GTTAATCCCATTGCTGTGAATAGCAAGTATTGCAATGTATTCACAGAGAACAAGCGAGTAGTATCTGTTATTTCAACATCAGATTTTGGGAAGgtctgtgatttcaatcatttgatgt-----tgcttgattc-------acatt-tcttgaatttcat---ctgtctttatgtaacaaaaaaaacaagctccagttt-tttcttttcca--------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7029617|gb|AW459334.1|AW459334EST: CGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAG GTGGCATTTGTTGCAATAGGAGCTACAATGGTTGGTAGCATTACTTTTACA
genomic: CGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAGgttagtcatt ... ttggattcagGTGGCATTTGTTGCAATAGGAGCTACAATGGTTGGTAGCATTACTTTTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAATCCCATTGCTGTAAATAGTAAGTACTGTAATGTCTTCACGGAGAACAAGAGAGTTATTTCAAGAATTTCAACTGTAGATTTTGGAAAGgttagtcattgcaattaatttgtgtctgaattcttgagttcgggactatatcctgctgaaatttatgccacatgtttatgaaatgatatgagttacctataatttattgccattttagcttatagttgtagacatgtattaaccattatcttataatttggattcag
- - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA