1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AAGACCTGCTGACCCTGAGGAAGAACTCCGATGGATGTCACAAGAAGTTCGTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAGgtaagcttctgtttttagcatttgccatttttataatttttccagttttcccagttaatttttgatgcattttctggttgcttggtttacag
species | Glycine max |
transcript | GLYMA12G37100.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
EST: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAG GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAAEST: gi|13312451|gb|BG406102.1|BG406102
genomic: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAGgtaagcttct ... tggtttacagGCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAA
EST: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAG GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAAEST: gi|9564156|gb|BE473665.1|BE473665
genomic: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAGgtaagcttct ... tggtttacagGCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAA
EST: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAG GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAAEST: gi|18038693|gb|BM306987.1|BM306987
genomic: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAGgtaagcttct ... tggtttacagGCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAA
EST: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAG GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAAEST: gi|209705823|gb|BW675928.1|BW675928
genomic: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAGgtaagcttct ... tggtttacagGCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAA
EST: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAG GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAAEST: gi|151401960|gb|EV271773.1|EV271773
genomic: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAGgtaagcttct ... tggtttacagGCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAA
EST: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAG GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAAEST: gi|51336285|gb|CO980151.1|CO980151
genomic: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAGgtaagcttct ... tggtttacagGCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAA
EST: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAG GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAAEST: gi|254322389|gb|GR837803.1|GR837803
genomic: GTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAGgtaagcttct ... tggtttacagGCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAA
EST: GTTTAGCTGCTAATGTTCCAAAG GCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAA
genomic: GTTTAGCTGCTAATGTTCCAAAGgtaagcttct ... tggtttacagGCAGTTGTCCTTTGTCAAGTTGAAAAGGCTAAGGAAGACATGCTGAATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGACCTGCTGACCCTGAGGAAGAACTCCGATGGATGTCACAAGAAGTTCGTGGATATGTTGAAGCAGTTTTAAATAGTTTAGCTGCTAATGTTCCAAAGgtaagcttctgtttttagcatttgccatttttataatttttccagttttcccagttaatttttgatgcattttctggttgcttggtttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT