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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTCTGAATTAAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGgtatgttttacattagtttctttgtattttttttagaatcccagtaaaacagaagcagtgaaatactgaaatcatctaagtttgccttaattcatgacac...

Basic information

species Glycine max
transcript GLYMA12G36520.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G36520.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G006452_T01 (Zea mays), 5'ss of exon 12
ATTGTCTGAATTAAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGgtatgtttt--acattagtttctttgtattttttttagaatcccagtaaaacagaagcagtgaaatactgaaatcatctaagtttgccttaattcatgacac----
  |||||||| | |||||||| || ||||| || ||||| |||  ||| || ||||| |||||||| || |||||||| |||||||||||  | || ||||||| | ||  | || | || || |  |  ||  |||    | | | ||   |  |    |||| || |   || |  |   | |   |  |   ||||  |    
TCTGTCTGAACTTAGTGGAGGACAACGATCCCTTCTTGCTCTTAGTCTTATCCTGGCTCTGCTTCTTTTTAAACCTGCACCACTTTACATATTGGACGAGgtatctctttaatatgatttactattcaaattcctta---ccactgcaatctactatttttgaactagt---atgactttgctgtatttggaagaatgaggcggcg

upper sequence: GLYMA12G36520.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv16s0022g00060.t01 (Vitis vinifera), 5'ss of exon 18
ATTGTCTGAATTAAGTGGAGGTCAGCGATCACTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGgtatgttttacattagtttctttgtattttttttagaatcccagtaaaacagaagcagtgaaatactgaaatcatctaagtttgccttaattcatgacac
 ||||| ||||| |||||||| || || |||||||||||||| ||||| ||  ||||| |||| || |||||||| ||||||||||| || || ||||||||    |     ||  ||| ||  | | |  ||| | ||     | ||| |          |    |   ||     |  | |    ||  |      ||
CTTGTCAGAATTGAGTGGAGGGCAACGTTCACTGCTTGCACTCTCTCTAATCTTGGCATTGCTCCTCTTCAAACCAGCTCCACTTTATATTCTGGATGAGgtgctgtacgattttcttttttcatttataatttggcatagttttgaaatattttttccatatctttagcatttgaaacttataatatagattgcattac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58022904|gb|CX709645.1|CX709645
EST:     TTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAG                         GTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATA
genomic: TTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGgtatgtttta ... attcttgcagGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATA
EST: gi|193318796|gb|FK284302.1|FK284302
EST:     TTCTGGCACTGCTGCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAG                         GTTGATGCAGCTCTT
genomic: TTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGgtatgtttta ... attcttgcagGTTGATGCAGCTCTT
EST: gi|58016495|gb|CX703237.1|CX703237
EST:     TTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAG                         GTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATA
genomic: TTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGgtatgtttta ... attcttgcagGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATAGGGAGAATGATA
EST: gi|193414074|gb|FK376108.1|FK376108
EST:     TTCTGGCACTGCTGCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAG                         GTTGATGCAGCTCTT
genomic: TTCTGGCACTGCTTCTGTTCAAACCTGCTCCACTTTACATCCTTGATGAGgtatgtttta ... attcttgcagGTTGATGCAGCTCTT