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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGgtatcttagagacaagaactacagatgataaagtttttatttagaagtaatactttttaactctactgaaacaaatttatgttatgtctgcactctttacag

Basic information

species Glycine max
transcript GLYMA12G07890.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07890.2 (Glycine max), 5'ss of exon 19
lower sequence: Vv06s0004g03700.t01 (Vitis vinifera), 5'ss of exon 18
ATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACATGTGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGgtatcttagagacaagaactacagatgataaagtttttatttagaagtaatactttttaactctactgaaacaaatttatgttatgtctgcactctttacag
 ||| ||||||||||||| ||||||||  |||| || |||||||| |||||| |  | ||||||||||||||||||||||| |||||||| ||||||||||||||  | |   |   | |||  | ||| || ||||  || |||      | |   | |    ||  || |||||    | ||| | ||  ||| || |||
CTATAGGGATTTGAAGCCTGAAAATGTTCTACTTCAGAGCAGTGGGCATGTGGCCTTGACAGATTTTGATTTGTCATGTTTGACATCTTGTAAACCACAGgtatc--acaactatctattacccaagattaatttttggttcagaga----attgaattatatcacataagcaaat---aggtatat-tgtgctcgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337410|gb|CO981276.1|CO981276
EST:     TGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAG                         CTTCTAGTTCCAGTTATAAATGAAAAGAAGAAAGCTCAGAAAGGCCCACAC
genomic: TGTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAACCACAGgtatcttaga ... ctctttacagCTTCTAGTTCCAGTTATAAATGAAAAGAAGAAAGCTCAGAAAGGCCCACAC