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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattccttcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag

Basic information

species Glycine max
transcript GLYMA11G35460.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 20
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattccttcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag
| | ||| ||  | || ||||||||||||||||| || |||||||| ||||  || || || || || || |||||| ||||| | |||||||| |||||||| ||   |  |  | ||         |||    ||| | |||  ||    |   ||| | ||  |     | ||||| |    ||  |||                        
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactactcctgatg--------ttgatatgtgcg-aagcaattttgtccttaacgtgg-cgcaccttaatatcgttcttta-cattcaacag------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 20
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattccttcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag
| | ||| ||  | || ||||||||||||||||| || |||||||| ||||  || || || || || || |||||| ||||| | |||||||| |||||||| ||   |     | ||         |||    ||| | |||  ||    |   ||| | ||  |     | ||||| |    ||  |||                        
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATAAAACTGTTTGAGCAATTCAAATCTTACGAGGGCCTTTACTTTTTCTTGGGAGCTTATTTGAGTTCCAGgtagttaactacacctgatg--------ttgatatgtgcg-aagcaattttgtccttaacgtgg-cgcaccttaatatcgttcttta-cattcaacag------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 18
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattccttcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag
||| ||||||| | || |||||||||||||||||  | ||||| || ||||  || ||||| || || || |||||| ||||||| ||||||||||||||||| || ||   |  |  |     || | |  ||       | |||       ||  | |    || |      ||  |||    | |||||   ||  |  || | |        
ATTCTGAACAACTAGGAGTTGATGCTTGCATAAAATTATTTGAACAATTCAAATCTTATGAGGGCCTCTACTTTTTCTTGGGATCCTATTTGAGCTCCAGgtagttactct-tactcctgatgttggtatttctta-----aggtggcatacctta-atattaaatttctcaacatggcatgcattgatattaaattttctttatattcatag---

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G477336_T01 (Zea mays), 5'ss of exon 7
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattccttcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag
| | ||| ||  | || |||||||||||||| ||  | |||||||| ||||  || ||||| || || || |||||| ||||||| ||| |||||||||||||||| ||   |  | | || |   |                | | || | ||   |||  | |         | |    || || |  ||| ||| |    ||    | |    
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctct-tgctgacagcagaatgcctttctcaaattttgcg-tgtctttctcaaaatgca---------aca----cacctgagttttctttacatgcaacagcgag----

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 7
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattcct-tcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag
| | ||| ||  | || |||||||||||||| ||  | |||||||| ||||  || ||||| || || || |||||| ||||||| ||| |||||||||||||||| || |   |   |  | | ||  ||             |||    | ||   |||  | |         | |    || || |  ||| ||| |    ||    | |    
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaaattttgcgtg---tctttctcaaaatgca---------aca----cacctgagttttctttacatgcaacagcgag----

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G591258_T01 (Zea mays), 5'ss of exon 11
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattcct-tcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctga--tatcatcagctaatatttttttccccctaa-acttgggacag-
| | ||| ||  | || |||||||||||||| ||  | |||||||| ||||  || ||||| || || || |||||| ||||||| ||| |||||||||||||||| || |   |   |  | | ||  ||             ||| || | ||   |||  | |      ||||  | || | |  |   ||        |||  | |       ||  
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGGCCTTTACTTTTTCTTGGGATCCTATCTGAGCTCCAGgtaatttctcttgctgacagcggaatgcctttctcaa--attttgtg-tgtctttctcaaaatgcaacacacctgaggtttctttacatgcaatagcgaggacccagatatccatttcaag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G430947_T01 (Zea mays), 5'ss of exon 6
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattcct-tcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctga--tatcatcagctaatatttttttccccctaaacttgggacag
| | ||| ||  | || |||||||||||||| ||  | |||||||| ||||  || ||||| |  || || |||||| ||||||| ||| |||||||||||||||| || |  ||   |  | | ||  ||             ||| || | ||   |||  | |      ||||  | || | |  |   |                          
ACTCTGAGCAGCTAGGGGTTGATGCTTGCATCAAATTATTTGAGCAATTCAAATCTTATGAGGACCTTTACTTTTTCTTGGGATCTTATCTGAGCTCCAGgtaatttctcttgttgacagcggaatgcctttctcaa--attttgtg-tgtctttctcaaaatgcaacacacctgaggtttctttacatgcaacag-----------------------

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 20
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattccttcatttttatagaactgttttggctggtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag
| ||||| ||| | || |||||||| ||||| || || |||||||| |||| ||| || ||||||||||| |||||||| || ||||| |||||    ||||||||   |||   |  |    ||||  |  ||| |   ||||     ||||        |      | | |  | | ||   || | | | | ||||| ||     || || ||
ACTGTGAGCAACTTGGTGTTGATGCATGCATTAAACTCTTTGAGCAATTCAAGTCGTACGAAGGGCTGTACTTTTTCCTAGGTTCATACTTGAGTATGAGgtaattttatcaagatcctg---ctgtcattcctg-taaacaagc---accat--------gcagcaatttgtatttttat-gacttacaatgtcttccctctg----tgtgatag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 19
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 20
ATTGTGAACAATTGGGCGTTGATGCTTGCATAAAGCTTTTTGAGCAGTTCAGGTCATATGAAGGGCTGTATTTTTTCCTGGGATCATATTTGAGCTCCAGgtaattccttcatttttatagaactgttttggctg--gtgggcaagtgatgccatttgtaaaggggatgttgtctgatatcatcagctaatatttttttccccctaaacttgggacag
| ||||| ||| | || |||||||| || || ||||| ||||||||||||| ||||||||||||||| || |||||||| || |||||||||||    |||| ||      ||   || | | ||| | | | |   ||   ||||  | |    |||||         || | || |    |   | ||| ||| | ||      |           
ACTGTGAGCAACTTGGTGTTGATGCATGTATTAAGCTCTTTGAGCAGTTCAAGTCATATGAAGGGCTATACTTTTTCCTAGGTTCATATTTGAGTATGAGgtgat------atagata-aaatctgatctcgtttctgtaaacaagc-acgattcttgtat--------ttatatgcttatgtttac-aatgtttctctctgtgcgatag--------