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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaaggcacaaattgatattgtgagtgagaatttataggcccaatattcaaaattttcattattttgtgcag

Basic information

species Glycine max
transcript GLYMA10G41920.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os05g08990.1 (Oryza sativa), 5'ss of exon 18
TTTCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgt--tagtagaaggcacaaattgatattgtg-----agtgagaatttataggcccaatattcaaaattttcattattttgtgcag--------------
|| |||| || |    ||| || || || || || || || ||  |  | |||||||||||||||||||| ||||||||||| ||| | ||  |||| ||||  ||||| |    |||  |  | | | ||     | | ||  |   ||      ||| |      | ||||   | | ||| |              
TTCCATTCTCAAGAACTGTCTACATCGAGCAGTCTGATTTTCGTGTAAAGGATTCAAAAGATTATTATGGGCTTGCTCCTGGTAAAACAGTACTACTAAGgtactagtacattatacatctgtagactctgtacttaattagtttgcttactttgtatactttgtggtctcatctatgtttgccgtctgaaactgatag

upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 19
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 18
TTTCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa-ggcacaa--------attgatattgtgagtgagaattta---taggcccaa-tattcaaaattttcattattttgtgcag
|  | || || |  |||||||| ||||| || || |||||||| ||| | |||||||||||||||||||| || || ||||| ||||||||  | || ||||   ||||| || |||         |||  || | |   |  |||| |     ||     | ||  |    ||     |  | | |||||
TACCGTTCTCTAGAGTTGTATACATTGACCAATCTGACTTCCGAATGAAGGATTCAAAAGATTATTATGGGCTCGCCCCTGGTAAATCTGTTTTGCTAAGgtatatagaaagggacagttttcatcattactacttttgctttgaatatgattcagttgtgactaaacgtgcttcctgctgctctttgcag

upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 19
TTTCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgt--tagtagaaggcacaaattgatattgtgagtgagaatttat--aggc------ccaatattcaaaattttcattattttgtgcag
|  | ||||||||  ||||||| ||||| || || || || |||||| | ||||||||||| || ||||| ||||||||||| ||||| ||  |||||||||  | ||| ||      || |  |||| |   |    | || |  ||          || ||| | ||| ||  | ||    |||||
TGCCCTTTTCCAAAATTGTATACATTGAGCAGTCTGATTTTCGGATGAAGGATTCAAAAGACTACTATGGGCTTGCTCCTGGAAAATCCGTCCTACTCAGgtacttgtaaaattatagaagttgtattttttttattcacttgttcagatatcccattaaaattgagaatctttttcatgc-atgcag

upper sequence: GLYMA10G41920.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 19
TTTCATTTTCCAATGTTGTATATATTGAACATTCGGACTTCCGGATGCAAGATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaaggcacaaattgatattgtgagt------gagaatttataggcccaatattcaaaattttcattattttgtgcag
|| ||||||| ||| |||| || ||||| ||  | || || |||||| ||||||| |||||||| ||||| ||||||||||| ||||||||  | |||||||   |  |  |   |||||  ||||   | |      ||| ||    | ||  || ||| | ||||||| | ||     ||||
TTCCATTTTCTAATATTGTGTACATTGAGCACACTGATTTTCGGATGAAAGATTCGAAAGATTACTATGGGCTTGCTCCTGGTAAATCTGTCCTGCTCAGgt--atctatagtttaaatttgtatttccaatctacttgagtataagaaagcagaagattgagaattttcttcatgc-acgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401220|gb|BM178002.1|BM178002
EST:     GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: gi|19346023|gb|BM890903.1|BM890903
EST:     GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: gi|16995857|gb|BM085229.1|BM085229
EST:     GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATT
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATT
EST: gi|298164021|gb|HO013666.1|HO013666
EST:     GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGGTGATAATGA
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: gi|17401215|gb|BM177997.1|BM177997
EST:     GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
EST: gi|20812918|gb|BQ297396.1|BQ297396
EST:     GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAG                         ATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA
genomic: GATTCAAAAGATTATTATGGCCTTGCTCCTGGGAAATCTGTGATACTCAGgttagtagaa ... ttttgtgcagATATGCATTTCCTATAAAGTGCACTGAAGTTATTCTAGCTGATGATAATGA