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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagtttttacatcgtgtacaattttatcatctccattttgtattttttaattcaagatccagcaatcataattcacattttcattgcaattgcttggttctgatccaatttatatgtgcag

Basic information

species Glycine max
transcript GLYMA10G38590.1
intron # 19
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495856|gb|EH224023.1|EH224023
EST:     ATGGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: ATGGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|120494406|gb|EH222573.1|EH222573
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTG
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTG
EST: gi|4260048|gb|AI416544.1|AI416544
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|57574855|gb|CX547830.1|CX547830
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|120494277|gb|EH222444.1|EH222444
EST:     TGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: TGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|58020248|gb|CX706990.1|CX706990
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|192333011|gb|FK024660.1|FK024660
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|120494776|gb|EH222943.1|EH222943
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|31310494|gb|CD395697.1|CD395697
EST:     ATGGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: ATGGAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|58015952|gb|CX702694.1|CX702694
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAACCAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|15203242|gb|BI426010.1|BI426010
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGT
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGT
EST: gi|120494261|gb|EH222428.1|EH222428
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
EST: gi|10231645|gb|BE800533.1|BE800533
EST:     GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCT                         GTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC
genomic: GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagttttt ... atatgtgcagGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGTTATGTTCTCCAGTTTGCAGATGATTTTACATACACCGATCCTgtgagtttttacatcgtgtacaattttatcatctccattttgtattttttaattcaagatccagcaatcataattcacattttcattgcaattgcttggttctgatccaatttatatgtgcag

- - - - - - - - - - GCAGAT
- - - - - - - - - -  CAGATG