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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctgaatctcttatagtgacaattatttcatctcatgcatctctatatccaaggtggcttttgttaaatgcttttctgttagaaatgggtctgtg...

Basic information

species Glycine max
transcript GLYMA10G35210.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35210.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv13s0019g04720.t01 (Vitis vinifera), 5'ss of exon 18
CCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctgaatctcttatagtgacaattatttcatctcat----gcatctctatatccaaggtggcttttgttaaatgcttttctgttagaaatgggtctgtg
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CCCCAACGATATTGCCTATGTCTTCTCTGGATATGCTCCTCTTAGCATCCGCCTTGTTCAGCAAGCAGTTCGATCTGGATGgtgaggctaatttcctta-agtg-caaagtttcaaactcattgttgtggcaaacaagctggaatgatttttttagtttgttccttttttccaaccatgaata--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303192|gb|FG997768.1|FG997768
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTGGGAAAT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|298183650|gb|HO028863.1|HO028863
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|207807592|gb|GD776611.1|GD776611
EST:     TTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
genomic: TTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|192334521|gb|FK024480.1|FK024480
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|120493752|gb|EH221919.1|EH221919
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAAT
EST: gi|207736250|gb|GD713529.1|GD713529
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCT
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCT
EST: gi|208328364|gb|GE132112.1|GE132112
EST:     TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATG                         GCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAA
genomic: TATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGgtaaatctga ... gatcttttagGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAA