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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACCAGCGACATTGACCATTAAGAGGGAAGGTTATAGTATCAAATGCAGTGGACCAAATGGATTTGTAATCACAGAAAAATTTTCACCGTCCACCACTgtaagatgttttattcttttatattctgtatggatatttggctaatttatcattgattcatcattccaggaaatgaagtaaaattctttaatgaaatata...

Basic information

species Glycine max
transcript GLYMA10G31880.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G31880.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv07s0130g00420.t01 (Vitis vinifera), 5'ss of exon 18
GGAACCAGCGACATTGACCATTAAGAGGGAAGGTTATAGTATCAAATGCAGTGGACCAAATGGATTTGTAATCACAGAAAAATTTTCACCGTCCACCACTgtaagatgttttattcttttatattctgtatggatatttggctaatttatcattgattcatcattccaggaaatgaagtaaaattctttaatgaaatata---
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GGAACCAGCTACTTTGGCCATTAAGAGGGAAGGTTACAGCATCAAGTGTACTGGACCTAGTGGTGCTGTAGTCTCTGAGAAGTTTTCATCAGCCACAAATgtatgattacttatttgctca-atttttttctattgtttgaa-aagctatccgcataaaatggtggtcagaag-gacttcctgtggtcttaggaataacagag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208250826|gb|GE047793.1|GE047793
EST:     GTGGACCAAATGGATTTGTAATCACAGAAAAATTTTCACCGTCCACCACT                         GTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGGTTCCAGT
genomic: GTGGACCAAATGGATTTGTAATCACAGAAAAATTTTCACCGTCCACCACTgtaagatgtt ... acttctgtagGTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGGTTCCAGT
EST: gi|193575173|gb|FK530732.1|FK530732
EST:     GTGGACCAAATGGATTTGTAATCACAGAAAAA-TTTCACCGTCCACCACT                         GTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGG
genomic: GTGGACCAAATGGATTTGTAATCACAGAAAAATTTTCACCGTCCACCACTgtaagatgtt ... acttctgtagGTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGG
EST: gi|207716967|gb|GD699533.1|GD699533
EST:     TGGA-CAAAGTGGAGTTGTAATCACAGAAAAATTTTCACCGTCCACCACT                         GTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGGTTCCAGT
genomic: TGGACCAAA-TGGATTTGTAATCACAGAAAAATTTTCACCGTCCACCACTgtaagatgtt ... acttctgtagGTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGGTTCCAGT
EST: gi|193666076|gb|FK610525.1|FK610525
EST:     GTGGACCAAATGGATTTGTAATCACAGAAAAATTTTCACCGTCCACCACT                         GTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGG
genomic: GTGGACCAAATGGATTTGTAATCACAGAAAAATTTTCACCGTCCACCACTgtaagatgtt ... acttctgtagGTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGG
EST: gi|208038932|gb|GD834608.1|GD834608
EST:     TGGA-CAAAGTGGAGTTGTAATCACAGAAAAATTTTCACCGTCCACCACT                         GTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGGTTCCAGT
genomic: TGGACCAAA-TGGATTTGTAATCACAGAAAAATTTTCACCGTCCACCACTgtaagatgtt ... acttctgtagGTTATGATTCCATATGGACATACTTCAGAGTTTATTATAATTGGTTCCAGT