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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAATACTCAAAGGGCAAGGAGCCAGCTTTTGGAAACGCATCTTGCAAAATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGgtatgtatgattattatattggtgatttaaatttaaataattctttgagagccgtgatatcattttccttacgaatcgcag

Basic information

species Glycine max
transcript GLYMA10G01660.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G01660.1 (Glycine max), 5'ss of exon 19
lower sequence: AT4G02030.2 (Arabidopsis thaliana), 5'ss of exon 20
GTCAAATACTCAAAGGGCAAGGAGCCAGCTTTTGGAAACGCATCTTGCAAAATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGgtatgtatga------ttattatattggtgatttaaatttaaataattctttgagagccgtgat---atcattttccttacgaa----tcgcag
||||||| | ||||| ||  | || |||||||| || || |||||||||||| |||| ||||| ||||| ||||| ||||| || || |||| ||| ||||||   | ||      ||    ||| | |   | |||     |         |     | |      |||  ||| | | | ||    | ||||
GTCAAATTCACAAAGAGCTCGTAGTCAGCTTTTCGAGACACATCTTGCAAAACTGTTCAAGCAAAAAGTAGAAATATTCACCAAGGTTGAATTTACCCAGgtaaaaacgaaagaggttcccttatagttatatcaaacgcgcactgccacacgctcatcatctcctgatctcttttcgtgctaaatatttgcag

upper sequence: GLYMA10G01660.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 18
GTCAAATACTCAAAGGGCAAGGAGCCAGCTTTTGGAAACGCATCTTGCAAAATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGgtatgtatgattattatattggtgatttaaatttaaataattctttgagagccgtgatatcattttccttacgaatcgcag
||||||||| ||||||||  ||||||||||| ||||||  ||||| ||||| ||||||||||| ||| | || ||||| |||||||| ||||| |||||||||||  |  |  |  |     |      ||||   ||   | || ||  |   ||| |  | | | |||   ||| ||||
GTCAAATACCCAAAGGGCCCGGAGCCAGCTTCTGGAAAGCCATCTAGCAAAGTTGTTTAAGCAAAAAATGGAGATTTTTACAAAAGTTGAATACACACAGgtatgattactggtggtgccattttaaataattggtattggtgttggaatgaaatga-aggagtgtgcttgtaaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338167|gb|CO982033.1|CO982033
EST:     AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAG                         GAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAA
genomic: AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGgtatgtatga ... cgaatcgcagGAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAA
EST: gi|193320668|gb|FK287309.1|FK287309
EST:     AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAG                         GAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTT-AAAG-TTTCAAGAA
genomic: AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGgtatgtatga ... cgaatcgcagGAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAA
EST: gi|22929796|gb|BU546935.1|BU546935
EST:     AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAG                         GAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAA
genomic: AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGgtatgtatga ... cgaatcgcagGAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAA
EST: gi|254331545|gb|GR843502.1|GR843502
EST:     AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAG                         GAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAA
genomic: AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGgtatgtatga ... cgaatcgcagGAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAA
EST: gi|120531925|gb|EH260058.1|EH260058
EST:     AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAG                         GAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAA
genomic: AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGgtatgtatga ... cgaatcgcagGAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTAAAAGTTTTCAAGAA
EST: gi|254331546|gb|GR843503.1|GR843503
EST:     AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAG                         GAGTCTGTTGTTACAACTTTAGTTAAATTGGGCCTTTAAAAGTTTTCAAGA
genomic: AATTGTTTAAGCAGAAAGTTGAAATTTTCACAAAAGTAGAATATACACAGgtatgtatga ... cgaatcgcagGAGTCTGTTGTTACAACTTTAGTTAAATTGGGCC-TTAAAAGTTTTCAAGA