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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGGCGGCTATCAGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttcattatctaaggcttggacaatctagagggagttatggctacaatttataatctataacactagtaaaggcaataccccattttttatctac...

Basic information

species Glycine max
transcript GLYMA08G23760.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 17
GTACGGCGGCTATCAGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtt-------tcattatctaaggcttggacaatctagagggagttatggctacaatttataatctataacactagtaaaggca------ataccccattttttatctac------
||  || |||| || || |||||||||||||| || ||||||||||||||||| || |||||||||||  |||| || |||||||   | |       ||||  ||| |   |||  || |   | ||    ||     |  ||  || ||     | | | |   || ||      || ||| |||| || || |       
GTCAGGAGGCTCTCTGCATGTGAAACTATGGGTTCAGCCACAACAATTTGCAGCGACAAGACAGGAACGCTGACTTTGAATCAGgttgggtgctgttgtcatattctcaatgttgtgcacttcggtgga---tacaaagatgatccatgattccagaaatttgctcagccacgacttattccctatttcttgtcaattttaag

upper sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G391042_T02 (Zea mays), 5'ss of exon 17
GTACGGCGGCTATCAGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttcattatctaaggcttggacaatctagagggagttatggctacaatttataatctataacactagtaaaggcaataccccattttttatctac------
||  || |||| || || || ||||| ||||| |||||||||||||| |||||||| ||||| || || ||||| |||||||||| |   |    | | |     ||  |||  ||  ||  | ||  |  |   |  | | ||   |  | ||  |      | |  |   ||  | ||  |       
GTGAGGAGGCTTTCTGCATGCGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTGACGTTAAATCAGgtgcaatggtgtttattcactttatacacgcttcagatatttccgtttgttaaatctgat---tggccctgattttaaaattctcttcttcctgattgattttaag

upper sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 17
GTACGGCGGCTATCAGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttcattatctaaggcttggacaatctagagggagttatggctacaatttataatctataacactagtaaaggcaataccccattttttatctac---------------
||  || |||| || || |||||||| ||||| |||||||||||||| |||||||| ||||| || || || || |||||||||| |   |    | | |     ||  |||  ||        |  |    | ||||     | |  ||    | |       ||     | || |  ||| |               
GTCAGGAGGCTTTCTGCATGTGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTAACTTTAAATCAGgtgcaatggtgtttattcactttatacatactgacatacatgtttcagataattctgtttgttgaatctgattggccctgatttttaaattctcttcttcctggttgattttaag

upper sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 18
GTACGGCGGCTATCAGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttcattatctaaggcttggacaatctagagggagttatggctacaatttataatctataacactagtaaaggcaataccc-cattttttatc-tac
|| ||  |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| |||   |||  |   | |  | | |      | | |  | | |     | |   ||  |||    | |  ||  |||         || || | | |||  | |
GTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAGgtctgttgtaaatttttggacct--ttctttttgctgaactaccttccaattttcctaaaagcttaagcttttaagatttgggtccacaatgtatatgatgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193437270|gb|FK400001.1|FK400001
EST:     CTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG                         ATGACTGTAGTTGAGGCATATGTTGGGAGCACAAAAGTAAATCCACCGGAT
genomic: CTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttca ... ggcattacagATGACTGTAGTTGAGGCATATGTTGGGAGCACAAAAGTAAATCCACCGGAT
EST: gi|193403373|gb|FK369487.1|FK369487
EST:     CTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG                         ATGACTGTAGTTGAGGCATATGTTGGGAGCACAAAAGTAAATCCACCGGAT
genomic: CTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttca ... ggcattacagATGACTGTAGTTGAGGCATATGTTGGGAGCACAAAAGTAAATCCACCGGAT
EST: gi|193426470|gb|FK386613.1|FK386613
EST:     CTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG                         ATGACTGTAGTTGAGGCATATGTTGGGAGCACAAAAGTAAATCCACCGGAT
genomic: CTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAGgcgagtttca ... ggcattacagATGACTGTAGTTGAGGCATATGTTGGGAGCACAAAAGTAAATCCACCGGAT