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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGgtgcgagaacatgtgatgttacttccgcagactacttttctctattcagaaattggcaatcagaattatgttctcttttgatgttgatatttcatcctgtag

Basic information

species Glycine max
transcript GLYMA08G22910.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 20
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 19
GATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGgtgcgag-aacatgtgatgttacttccgcagactacttttctctattcagaaattggcaatcagaattatgttctcttttgatgttgatatttcatcctgtag
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||  | || ||||| |||||||| ||||| ||||| ||   ||||||||| | |  ||     |     | ||  | | |  | || |   |||    | | |   |||       ||| |  ||| ||  |                   
GATCTATACAAATTCCGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCATTTTCTTTGGAAGTGGCAGCGCAATGATCGTAATTCGAGTGGCAAGgtacaaataatccaagcctcaattttaggaaatgagttgttgatatcttcataataataatag-----atgcttccttgtgtag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339430|gb|GR848147.1|GR848147
EST:     TTCACCTGCTCTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAG                         GCCACTGCTACCTTGCAACCTCAGTTGTGGCAACCATCGAGTG-CATCCTG
genomic: TTCACCTGCTCTGGAAATGGCAGCGAAATGAGCGTAACTCATCTGGCAAGgtgcgagaac ... catcctgtagGCCACTGCTACCTTGCAACCTCAGTTGTGGCAACCATCGAGTGGCATCCTG