Sequence
atgc intronic sequence ATGC exonic sequenceGGTATTGCCACTGAAGTGCATAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttttctctatcaaatgaatcttcattttctgtgatttctttaacatttggccgaattacatttctaaatatattcatgtccaaatctattttatga...
Basic information
species | Glycine max |
transcript | GLYMA08G22140.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G124886_T01 (Zea mays), 5'ss of exon 19
GGTATTGCCACTGAAGTGCATAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttttctctatcaaatgaatc-ttcattttctgtg---atttctttaacatttggccgaattacatttctaaatatattcatgtccaaatctattttatga
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GTGATTGCTACTGAGGTGCAAAGTGAATCCAAGTGGAAGCAATTAGGGGAGTTAGCTATGTCAAATGGAAAGgtacag----ctactgggtctatcgtttatcttgcatgcgcaatgccgcaatctgcgttgtccttgtacgctgtggttcagccatgacattttcttaattttta
upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 19
GGTATTGCCACTGAAGTGCATAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttttctctatcaa--atgaatctt-cattttctgtgatt--tctttaacatttggccgaattacatttctaaatatattcatgtccaaatctattttatga
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GACATTGCTACAGAAGTGCAAAGTGAGTCAAAATGGAAGCAATTGGGAGAATTAGCTATGTCCACTGGAAAGgtattctg-tttaccaagaatggatctttcgttatctgagaaaagtgcccatcagtaccaatgctagcagtgtggattctctttctgggaaagacaagttt----
upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 19
GGTATTGCCACTGAAGTGCATAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttttctctatcaaatgaatcttcattttctgtgatttctttaacatttggccgaattacatttctaaatatattcatgtccaaatctattttatga---
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GAAATAGCTTCAGAAGTACAGAGTGAAACCAAATGGAAGCAGTTGGGAGAATTAGCTATGTCCAATGGAAAGgt-tttttggctaccat-taattgtttactgacagttaattgctggatgagcagccctcattcatcac-acatgcatgcaaatccttggtgaaatggcagtgt
upper sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 19
lower sequence: PP1S61_1V6.1 (Physcomitrella patens), 5'ss of exon 19
GGTATTGCCACTGAAGTGCATAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttttctctatcaaatgaatcttcattt-tctgtgatttctttaacatttggccgaattacatttctaaatatattcatgtccaaatct--attttatga------------------------
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GCTATTGCTGAGGAATCACATAGTGAGTCCAAGTGGAAGCAACTGGGAGAATTGGCAATGTCAGCTGGAAAGgtataggtctgtttgaagcagatgcgtgtgtgtttttcaaagctctaacatacatctagagta-atgtccatgctctttcatttgcacacgttgatttcattcggtgcatggcatgtgtttctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151411223|gb|EV281034.1|EV281034EST: GTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAG TTAGAAATGGCCGAAGAGTGTTTAAAACAAGCAATGGATTTGAGTGGGTTA
genomic: GTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttttct ... gttcttgcagTTAGAAATGGCCGAAGAGTGTTTAAAACAAGCAATGGATTTGAGTGGGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTATTGCCACTGAAGTGCATAGTGAGTCCAAATGGAAGCAATTGGGAGAATTAGCCATGTCTACTGGAAAGgtgtttttctctatcaaatgaatcttcattttctgtgatttctttaacatttggccgaattacatttctaaatatattcatgtccaaatctattttatga
- - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA