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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAGATTTCCCATGTCTATAATTTTTGGGGGAGATGGAAGTTACATGAGTCCATTCTCTCTTCATAGTGATAATATTCTTACTAGCATCATGAGTCAGgtttgctcaactcaaaatttagcctttttgtgaaatcctggatgtttaacatgttcactgatttttatgtttgtctgctttctag

Basic information

species Glycine max
transcript GLYMA08G03550.1
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03550.1 (Glycine max), 5'ss of exon 19
lower sequence: LOC_Os01g09246.1 (Oryza sativa), 5'ss of exon 17
TCAAAGATTTCCCATGTCTATAATTTTTGGGGGAGATGGAAGTTACATGAGTCCATTCTCTCTTCATAGTGATAATATTCTTACTAGCATCATGAGTCAGgtttg--ctcaactcaaaatttagcctttttgtgaaatcctggatgtttaacatgttcactgatttttatgtttgtctgctttctag
 ||||| ||||| ||||   | || ||||| || |||||||||||||||  |||||| || || |||||||||| | | || |||||| | ||||||||||| ||   | ||        | |     || || |  | ||| |  |||  | | | |    ||     | ||| |   | ||  ||
CCAAAGGTTTCCAATGTGCTTGATCTTTGGAGGTGATGGAAGTTACATGGCTCCATTTTCACTCCATAGTGATAGTGTACTCACTAGCCTTATGAGTCAGgtatgattttaagatctttctaactgcattagttatgttctgaagctttttcttatacttctataacactattt-taaacattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259402|gb|BG882310.1|BG882310
EST:     GTCCATTCTCTCTTCATAGTGATAATATTCTTACTAGCATCATGAGTCAG                         TCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAACGCTCAA
genomic: GTCCATTCTCTCTTCATAGTGATAATATTCTTACTAGCATCATGAGTCAGgtttgctcaa ... tgctttctagTCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAACGCTCAA
EST: gi|208179902|gb|GD979295.1|GD979295
EST:     CCATTCTCTCTTCATAGTGATAATAATTACTTACTAGCATCATGAGTCAG                         TCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAATGCTCAA
genomic: CCATTCTCTCTTCATAGTGATAAT-ATT-CTTACTAGCATCATGAGTCAGgtttgctcaa ... tgctttctagTCTGTTCCACCAACTATATGGTATCGATTAGTGGCTGGTCTTAACGCTCAA