Sequence
atgc intronic sequence ATGC exonic sequenceTGTAAGCACCTTGAAGTTTGCTGAGCGGGTTTCCGGCGTGGAGTTAGGCGCTGCTCGTAGCAACAAAGAGGGAAGGGATGTGAGAGAACTTATGGAGCAGgttatttctatttttgattgcattttacttggatgttctagttatcagcaaagcaccaaatgttaggaattataattttatttattcattttgtttttac...
Basic information
species | Glycine max |
transcript | GLYMA08G01800.1 |
intron # | 19 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G323622_T01 (Zea mays), 5'ss of exon 9
TGTAAGCACCTTGAAGTTTGCTGAGCGGGTTTCCGGCGTGGAGTTAGGCGCTGCTCGTAGCAACAAAGAGGGAAGGGATGTGAGAGAACTTATGGAGCAGgttatttctatttttgattgcattttacttggatgttctagttatcagcaaagcaccaaatgttaggaattataattttatttattcattttgtttttac-
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AATAAGCACTTTGAAGTTTGCTGAAAGGGTTTCTGGAGTTGAGTTAGGTGCTGCAAGAAGTAACAAAGAGGGTAAAGATATAAAAGAGCTGCTAGAACAGgtctttgcaactgtctcgtatatat-atatagataatttctgtttctatcgttcaacactaggaagaaaactttgtacaaacttttacttgagcttccagg
upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 19
lower sequence: GRMZM2G124883_T01 (Zea mays), 5'ss of exon 9
TGTAAGCACCTTGAAGTTTGCTGAGCGGGTTTCCGGCGTGGAGTTAGGCGCTGCTCGTAGCAACAAAGAGGGAAGGGATGTGAGAGAACTTATGGAGCAGgttatttctatttttgattgcattttacttggatg-ttctagttatcagca--aagcaccaaatgttaggaattata---attttatttattcattttgtttttac
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AATAAGCACTTTGAAGTTTGCTGAAAGGGTTTCTGGAGTTGAGTTAGGTGCTGCAAGAAGTAACAAAGAGGGTAAAGATATAAAAGAGCTGCTAGAACAGgttcttacaactgtc--tcacatat-attcagataattttagtttctgtcattcaacactaggaagcaatctttatacaaacttaacttgagcattcaacact---
upper sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 19
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 19
TGTAAGCACCTTGAAGTTTGCTGAGCGGGTTTCCGGCGTGGAGTTAGGCGCTGCTCGTAGCAACAAAGAGGGAAGGGATGTGAGAGAACTTATGGAGCAGgttatt---tctatttttgattgcatttt---acttggatgttctagttatcagcaaagcaccaaatgttaggaattataattttatttattcattttgtttttac--
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TATAAGTACCTTGAAGTTTGCCGAGAGAGTCTCTGGTGTTGAGTTAGGTGCTGCAAGGAGCAACAAAGAGGGAAGGGATGTTAGAGAACTTATGGAGCAGgtcattacgtttattataattttcattgtttgacttctatgcattaagattttatgaagtgctgttcccttgtgtttgctatcttctgattccctgttgatcttgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193338415|gb|FK305218.1|FK305218EST: CTTATGGAGCAG TTGGCATCTCTCAAGGATGTAATTGCAAGGAAGGATGAAGAGATTGAACGG
genomic: CTTATGGAGCAGgttatttcta ... attcttgcagTTGGCATCTCTCAAGGATGTAATTGCAAGGAAGGATGAAGAGATTGAACGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAAGCACCTTGAAGTTTGCTGAGCGGGTTTCCGGCGTGGAGTTAGGCGCTGCTCGTAGCAACAAAGAGGGAAGGGATGTGAGAGAACTTATGGAGCAGgttatttctatttttgattgcattttacttggatgttctagttatcagcaaagcaccaaatgttaggaattataattttatttattcattttgtttttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG