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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCACATCAGAAGAATCAGGTGAAAGACTCCATAGATGTTGATGAACCAGAAGgtatggaagtactctacaaactgtagtcttttttcttatttgtatataattaattaggtgaattacactcctaaaagatgctttaattacactactccct...

Basic information

species Glycine max
transcript GLYMA07G38050.2
intron # 19
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 19
lower sequence: AT3G06400.2 (Arabidopsis thaliana), 5'ss of exon 19
CAAGCACATCAGAAGAATCAGGTGAAAGACTCCATAGATGTTGATGAACCAGAAGgtatggaagtactctacaaactgtagtcttttttcttatttgtatataattaattaggtgaatta--cactcctaaaagatgctttaattacactactccct
||| |||||||||| |||||| |||||||| | || |||||||| ||||||||||||    |  |  |   ||   |||   | | |  |   |||||  | |  |  ||  |  ||      |||  | ||  ||  |||  |||           
CAAACACATCAGAAAAATCAGTTGAAAGACACAATTGATGTTGAAGAACCAGAAGgt--caagcttgtacccactttgttaacatgtacccactttgttaacatgtttttcagcaaacctattactgattaagaatttttttgttag----------

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 19
lower sequence: AT3G06400.3 (Arabidopsis thaliana), 5'ss of exon 19
CAAGCACATCAGAAGAATCAGGTGAAAGACTCCATAGATGTTGATGAACCAGAAGgtatggaagtactctacaaactgtagtcttttttcttatttgtatataattaattaggtgaatta--cactcctaaaagatgctttaattacactactccct
||| |||||||||| |||||| |||||||| | || |||||||| ||||||||||||    |  |  |   ||   |||   | | |  |   |||||  | |  |  ||  |  ||      |||  | ||  ||  |||  ||| |         
CAAACACATCAGAAAAATCAGTTGAAAGACACAATTGATGTTGAAGAACCAGAAGgt--caagcttgtacccactttgttaacatgtacccactttgttaacatgtttttcagcaaacctattactgattaagaatttttttgttagaag-------

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 19
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 19
CAAGCACATCAGAAGAATCAGGTGAAAGACTCCATAGATGTTGATGAACCAGAAGgtatggaagtactctacaaactgtagtcttttttcttatttgtatataattaattaggtgaattacactcctaaaagatgctttaattacactactccct
||| ||||||| ||||||||| | ||||||||||||||||| |||||||| ||||||||   | | ||   |    | |     |  ||| || |  | ||  |    || |||||  | |||| ||||  ||    || | ||           
CAAACACATCAAAAGAATCAGTTAAAAGACTCCATAGATGTGGATGAACCTGAAGgtattttaattcttctc----ttttaagatgcttcctactaatctactaccctttcggtgagct-cactgctaattga-atattgaatatttag------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208152321|gb|GD946150.1|GD946150
EST:     AGGTGAAAGACTCCATAGATGTTGATGAACCAGAAG                         AGGTGGGTGATCCATTGACTGCCG-GGAGTTAGAAGAAAAGGAGCAGTTGC
genomic: AGGTGAAAGACTCCATAGATGTTGATGAACCAGAAGgtatggaagt ... gaatgtttagAGGTGGGTGATCCATTGACTGCCGAAGAGTTAGAAGAAAAGGAGCAGTTGC